Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dret_1894 |
Symbol | |
ID | 8419737 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Desulfohalobium retbaense DSM 5692 |
Kingdom | Bacteria |
Replicon accession | NC_013223 |
Strand | - |
Start bp | 2174960 |
End bp | 2176723 |
Gene Length | 1764 bp |
Protein Length | 587 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | 645038480 |
Product | RNA polymerase, sigma 70 subunit, RpoD subfamily |
Protein accession | YP_003198756 |
Protein GI | 258406014 |
COG category | [K] Transcription |
COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.0780433 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 0.0147198 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGTAACA TCAAGGATGT CCAGCAGATT AAAACGCTCA TCGCCGAGGG CAAAAAGAAG GGGTTTTTGA CCTTTGATGA GCTAAACAAA GCCCTGCCCA ACGAGGTGAA CCAACCGGAG CAGATCGAAG AGATTATCAC CATCTTCGAC CAGTTGGACA TCGCCATCGT GGACGCCCAG ACAGGCAAAA ATCTGGGCAT GGTGGCCGGT GACTCCGGGG GAGATTCCGA GGAGGAAGAA GAACTCGAGA TCACGGAAAC CGAAGAGGTT GAAACCACAC GCAGTTCCGA TCCCGTGCGC ATGTATCTGC GCGAGATGGG GATTGTGCCC CTCTTGGACC GCGAAGGCGA GGTCGAGATC GCCAAGAAGA TCGAGGACGG AGAATTGGAG GTTCTCTACG CCTTGATCGA AGTCCCTGTG GCCGTGGAAG AACTGGTCGG GGTCGGCGAC GACCTCCAGA AAGGGACCAT CAAACTCAAG GATGTGGTCA AGACCATCGA GGAAGACGAC CCGTCCGAAG ATGAGATGAA CCAGCGCGAG CGGGTCATTT ACCTGCTTGA AGAGCTGCGC AAGCTCTATA AGAAACGCGT CAATATCTAT TACAAGCTTG ATGAGTGCGC GACGCTGGAC AAGCGGGTGC GCGGCGTCCA GAACAAGATC ATCGACTACA AACACGAAGT CGTGCAGATC CTGCGGGATA TCAAGCTGGA AAAAACGCTC ATCGACCGGG TTATCGAGAC CCTGCACGAT TACGTGCGCC AGATGCACAA CTGCCGGCGC GACCTTTCCG CCTATGTCCT GTCTGTGGGC AAGACCCGGG GCGAGATCGA AGAGATCTTC GCCGAACTCG ACCGGCGCGA GCTCAATCCG GTTATCGCTG CGGACAATCT GGGCATGACC GTGGAAGAGC TCTTTTCTTT CAAGGAGATG CTGGCCGGGA AGATGGAGAT TTTGCAGCGC CTGGAAGAGA AGTGCTGCCA TTCCGTGACC GACCTTGAAG AGATCCTGTG GCGCATCAAC CGCGGCAATT ACGACGCCCT GCGGGCCAAG CAGGAGCTTA TCCGCTCCAA CCTCCGTCTG GTGGTTTCCA TCGCCAAGAA ATACACCAAC CGCGGTCTGC AATTCCTGGA TCTCATCCAG GAAGGCAATA TCGGCCTGAT GAAAGCCGTG GACAAATTCG AGTACCAGCG CGGCTACAAG TTTTCGACCT ACGCCACGTG GTGGATCCGG CAGGCCATCA CCCGGGCCAT TGCCGACCAG GCGCGGACCA TCCGTATTCC GGTGCACATG ATCGAGACTA TCAACAAGCT CATCCGGACC TCGCGCTATC TGGTCCAGGA ACTGGGGCGT GATCCTCAGC CCGAGGAAAT CGCCGAGCGC ATGGACTATC CGGTGGAGAA GGTCAAGAAG GTCCTCAAGA TCGCCAAGGA GCCCATCTCT CTCGAAACGC CCATCGGCGA CGAGGAGGAT TCCAGTCTGG GCGATTTTAT CGAGGACAAG AAAGCCGTGG CCCCGGCGGA AGAGGCGGTC AATTCCAAGC TGGCCGAGCA GATCTCCACA GTGCTTTCCG AACTCACGCC GCGCGAGGAA CAGGTCCTGC GCAAACGGTT CGGCATCGGC GAGAAATCCG ATCACACGCT GGAAGAAGTG GGCAAGCTGT TCAACGTCAC TCGGGAACGT ATCCGGCAGA TCGAGGCCAA GGCGCTGCGG AAACTGCGCC ACCCCGTGCG CAGCCAGAGC CTGCGTTCCT ATTACGAATC CTAG
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Protein sequence | MSNIKDVQQI KTLIAEGKKK GFLTFDELNK ALPNEVNQPE QIEEIITIFD QLDIAIVDAQ TGKNLGMVAG DSGGDSEEEE ELEITETEEV ETTRSSDPVR MYLREMGIVP LLDREGEVEI AKKIEDGELE VLYALIEVPV AVEELVGVGD DLQKGTIKLK DVVKTIEEDD PSEDEMNQRE RVIYLLEELR KLYKKRVNIY YKLDECATLD KRVRGVQNKI IDYKHEVVQI LRDIKLEKTL IDRVIETLHD YVRQMHNCRR DLSAYVLSVG KTRGEIEEIF AELDRRELNP VIAADNLGMT VEELFSFKEM LAGKMEILQR LEEKCCHSVT DLEEILWRIN RGNYDALRAK QELIRSNLRL VVSIAKKYTN RGLQFLDLIQ EGNIGLMKAV DKFEYQRGYK FSTYATWWIR QAITRAIADQ ARTIRIPVHM IETINKLIRT SRYLVQELGR DPQPEEIAER MDYPVEKVKK VLKIAKEPIS LETPIGDEED SSLGDFIEDK KAVAPAEEAV NSKLAEQIST VLSELTPREE QVLRKRFGIG EKSDHTLEEV GKLFNVTRER IRQIEAKALR KLRHPVRSQS LRSYYES
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