Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dret_1889 |
Symbol | |
ID | 8419732 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Desulfohalobium retbaense DSM 5692 |
Kingdom | Bacteria |
Replicon accession | NC_013223 |
Strand | + |
Start bp | 2172452 |
End bp | 2173126 |
Gene Length | 675 bp |
Protein Length | 224 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 645038475 |
Product | nuclease (SNase domain protein) |
Protein accession | YP_003198751 |
Protein GI | 258406009 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG1525] Micrococcal nuclease (thermonuclease) homologs |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 0.058729 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 14 |
Fosmid unclonability p-value | 0.0179002 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGAATTTTT GCCGGTTCGG ACGCATGTGG TGCCGAATAA TCGCTGTTCT TGTGGTTGTC ATGTTCTGGA GCGGTTTGGT CGCCGCTGTC GCCGATGATC ATCGTGTCGC TGAGGTCCGC TGGATCCCGG ACGGGGACAC GGTCATTCTT GAAGACGATA CCACCATTCG CCTGCAAGGC ATCGACACCC CCGAGACCAG GCATGACGAC CAACCGGAGC AGTATTTTGC CCAGGAAGCG CGAAAGGCGC TCCAGATGTA TGTCGAGCAA GGGATGCGTT TTGTCCCCTC CCAGGAAGGC AAGGACCGTT ATGGACGAGT CCTGGCGCGT GGCTTTCTGA GCGACGGACG CCTGGTCAAC GAAGTGCTGG TTCGCGACGG TCTGGCCTTT TTCTATCCCC ATCCGCATCA GGATCCCAAA TTCCAGGACC GCCTCCTGCG GGCCCAACAG GAAGCCATGC GTGCCGGGCG CGGCTTTTGG CCGCGCATCC TCGATATGCC GGAGGCTGAC GAGCCGTATT TGGGCAACAC CCGAAGTTTT CGTTTCCACC GTCTGGAATG TCCGTTCGGG CTAAAAACAG CGCAGGGAAA CCGACGCCAT TTCGGCTCGC TCTATGATGC GTTTGACGCC GGATTCGCGC CATGTCGGCG GTGTACGGTA TGGCCGGAGA AGTAA
|
Protein sequence | MNFCRFGRMW CRIIAVLVVV MFWSGLVAAV ADDHRVAEVR WIPDGDTVIL EDDTTIRLQG IDTPETRHDD QPEQYFAQEA RKALQMYVEQ GMRFVPSQEG KDRYGRVLAR GFLSDGRLVN EVLVRDGLAF FYPHPHQDPK FQDRLLRAQQ EAMRAGRGFW PRILDMPEAD EPYLGNTRSF RFHRLECPFG LKTAQGNRRH FGSLYDAFDA GFAPCRRCTV WPEK
|
| |