| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dret_1873 |
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| Symbol | dapF |
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| ID | 8419716 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfohalobium retbaense DSM 5692 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013223 |
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| Strand | + |
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| Start bp | 2145989 |
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| End bp | 2146834 |
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| Gene Length | 846 bp |
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| Protein Length | 281 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 645038459 |
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| Product | diaminopimelate epimerase |
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| Protein accession | YP_003198735 |
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| Protein GI | 258405993 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0253] Diaminopimelate epimerase |
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| TIGRFAM ID | [TIGR00652] diaminopimelate epimerase |
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Plasmid Coverage information |
| Num covering plasmid clones | 35 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.00642624 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCGCTCAG ATTTTGGCCA CGCTAGCTTT GTTTATAAAA TGCAAGGCAG CGGCAACGAC
TTTATTCTGA TTGACAATAC CGAAAGCCGT GTCCCCCAGA AAGCCATGGC TGAATGGGCC
CAGAAAATCT GCCGCCGCGC CTTTGGTGCC GGCGCCGACG GCCTGATCTT TCTGGACGAA
GCCCCTGCCG ACAGCGAAGC CGACTACATC TGGCATTTTT ATAACGCAGA CGGTTCGCGG
GCGGAAATGT GCGGCAACGG CTCCCGCTGT GCGGCCCGCC TGGCCTACGA ACTCGAGCTC
GCTGGCCGGA CCCACGTCCT GGGCACGGAT GCCGGCCCTG TGCGTGCTGA AGTCCTGCCG
GAAACTGACG AGGCCAAAGT CCAGCTCACC GCCCCCATCG ATCTCAAGAC GAGCATGACC
TTGTCCGCCG CCGGTCGGGA ATTGACCGTG CACCACGTCA ACACCGGTGT GCCCCATGTG
GTTCAGGTCG TGGATGACGT GGACAGTGTC GACTTGGCGA CCATCGCTCC GGCTCTTCGC
TACCATGACG CTTTTGCGCC GGCCGGGGGC AATATCAATT TTATCCAGGT CACGGGGCCA
GACACCATTC GTCTGCGCAC CTATGAGCGC GGCGTGGAGG ACGAAACCTA CGCCTGCGGC
ACCGGCGCCG CTGCGGCCGT CTACATCGCC AATCAGCTCG GCCTCTGCGC TCCGGCGGCC
ACGGTTACGA CCTCCGGCGG CGAACACCTG ACCATCAGCC AGGAAAACGG CAACCTCTAT
CTCCAGGGCC AGGCCGTTCT CGTCTATAAA GGCCGTTTGT TTCTGCGGTC TGTCGGACTT
GGATAG
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| Protein sequence | MRSDFGHASF VYKMQGSGND FILIDNTESR VPQKAMAEWA QKICRRAFGA GADGLIFLDE
APADSEADYI WHFYNADGSR AEMCGNGSRC AARLAYELEL AGRTHVLGTD AGPVRAEVLP
ETDEAKVQLT APIDLKTSMT LSAAGRELTV HHVNTGVPHV VQVVDDVDSV DLATIAPALR
YHDAFAPAGG NINFIQVTGP DTIRLRTYER GVEDETYACG TGAAAAVYIA NQLGLCAPAA
TVTTSGGEHL TISQENGNLY LQGQAVLVYK GRLFLRSVGL G
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