| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dret_1827 |
|---|
| Symbol | |
|---|
| ID | 8419668 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfohalobium retbaense DSM 5692 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013223 |
|---|
| Strand | + |
|---|
| Start bp | 2096680 |
|---|
| End bp | 2098449 |
|---|
| Gene Length | 1770 bp |
|---|
| Protein Length | 589 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 645038411 |
|---|
| Product | V-type ATP synthase subunit A |
|---|
| Protein accession | YP_003198689 |
|---|
| Protein GI | 258405947 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1155] Archaeal/vacuolar-type H+-ATPase subunit A |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCGATC CACACGCCAC TTCCACTGCA CAAAACGACG CCCAGGCCAC GGGGCGTATT
GTCGGCGTCA ACGGCAACCT GGTCGTCACG GAATTCGATA CGCCCATCTT CCAGAATGAA
ACGGCCCTGG TCCATTGCCA CGATCTCCGC CTCCCGGCGG AAATCGTTCG CATCCGCGGC
AACCGGGCCG AAATGCAGAT TTTTGAAGAC ACGAAAGATC TGCGGGTGGG GGACACCGTC
AGCTTTTCCG GGGAACTCCT GTCCGTGGAA CTCGGCCCCG GCCTTTTGGG CCAAGTCTTC
GACGGGCTCC AAAATCCACT CTACGACATG GCTGAGACCT ACGGCACCTT TCTCCAGCGT
GGCGCCAGCC GACCGGCCTT GGACCGCACA CAGCACTGGG AATTCACCCC CGAGGTCGCC
GAGGGCGAAG AGGTCAAAGC CGGTTCGTGG CTCGGATCCG TCCCGGAGGG GATCTTTGGC
CACAAATTGA TGGTCCCCTT CCATTTGCGA GGCACCTATA CCGTTACGCG TATCAGTCCA
GCCGGAACCT ACGACCTCAA CACGCCCCTG GCCACGCTCA CCGGCCCCAA GGGGGAGTCC
ATCGAGGTTG GTCTCTACCA GGAATGGCCG GTCAAGATCC CCATCCGGGC CTATGCCGAC
CGCCTCCGCC CGACCAAGCC CCTGAGCACG AAAATACGGC TCATCGACAC CTTTTTCCCC
ATCGCCCGGG GCGGGACCTA TTGCATCCCC GGTCCGTTCG GTGCGGGAAA AACCGTTATC
CAACAATTGA CCAGCCGCCA CGCCGATGTG GACGTCGTCA TTGTCGCCGC CTGCGGCGAG
CGGGCCGGGG AGGTCGTGGA GACCATCCGC GAATTTCCCG AGTTGGAAGA CCCGCGCACC
GGCCGAAGCC TTATGGAACG CACGATCATC ATCTGCAACA CGAGTTCCAT GCCGGTGGCC
GCCCGGGAAG CCTCAGTCTA TACCGCCGTC ACCCTGGCTG AATACTACCG GCAGATGGGA
CTCAACGTCC TTTTGCTGGC CGACTCCACC TCCCGCTGGG CCCAGGCCCT GCGCGAACTC
TCCGGACGAC TTGAGGAAAT CCCGGGCGAG GAGGCCTTCC CCGCCTACCT CGAATCGGTG
ATCGCGGCCT TTTACGAACG AGCCGGCACC ATCCGCCTGC ACAGCGGCGA TGCCGGCTCG
GTGACCATTG GCGGCACGGT CAGCCCGGCC GGAGGGAACT TTGAAGAACC TGTGACCCAG
AGCACGCTCA AGGTGGTCGG TGCCTTCCAC GGCCTCTCCC GCCAACGCTC CGACGCCCGG
CGGTACCCGG CCATCGACCC CCTGGACAGT TGGAGCACCT ACCCCGGGCA GGTCGACCGT
GAACAGGTCC AGGCCATGCA CGAACTGCTG CAACACAGCA ACGATATCGA CCAGATGATG
AAGGTTGTCG GCGAGGAGGG CACCCCGTTG GAGGACTTTG TGATCTATCT CAAAGGGGAA
TTTCTGGACC AGGTCTATTT GCAACAGGAC GCCTTTGACC CGGTCGACGG CGCCACAACC
CTCAAACGCC AGAGCTACGT CTTCGACCGA CTGCATTCCT TTTTGCAGAC CTCGATGACC
TTTGCGGACA AGGATGCGGC CCGCTCGTTT TTTCAAAAGT TGACCCAGGC GACGATTGAC
TGGAACCGGC TCGCCATGGA CAGCGATGAC TTCCACCATC AGGAAAAGCG GCTGGAGCAA
CTGGTCGCGG ACGTGACAGA CTATGCGTAA
|
|---|
| Protein sequence | MTDPHATSTA QNDAQATGRI VGVNGNLVVT EFDTPIFQNE TALVHCHDLR LPAEIVRIRG
NRAEMQIFED TKDLRVGDTV SFSGELLSVE LGPGLLGQVF DGLQNPLYDM AETYGTFLQR
GASRPALDRT QHWEFTPEVA EGEEVKAGSW LGSVPEGIFG HKLMVPFHLR GTYTVTRISP
AGTYDLNTPL ATLTGPKGES IEVGLYQEWP VKIPIRAYAD RLRPTKPLST KIRLIDTFFP
IARGGTYCIP GPFGAGKTVI QQLTSRHADV DVVIVAACGE RAGEVVETIR EFPELEDPRT
GRSLMERTII ICNTSSMPVA AREASVYTAV TLAEYYRQMG LNVLLLADST SRWAQALREL
SGRLEEIPGE EAFPAYLESV IAAFYERAGT IRLHSGDAGS VTIGGTVSPA GGNFEEPVTQ
STLKVVGAFH GLSRQRSDAR RYPAIDPLDS WSTYPGQVDR EQVQAMHELL QHSNDIDQMM
KVVGEEGTPL EDFVIYLKGE FLDQVYLQQD AFDPVDGATT LKRQSYVFDR LHSFLQTSMT
FADKDAARSF FQKLTQATID WNRLAMDSDD FHHQEKRLEQ LVADVTDYA
|
|---|
| |