| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dret_1797 |
|---|
| Symbol | |
|---|
| ID | 8419638 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfohalobium retbaense DSM 5692 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013223 |
|---|
| Strand | - |
|---|
| Start bp | 2066200 |
|---|
| End bp | 2067174 |
|---|
| Gene Length | 975 bp |
|---|
| Protein Length | 324 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 645038381 |
|---|
| Product | diguanylate cyclase with PAS/PAC sensor |
|---|
| Protein accession | YP_003198659 |
|---|
| Protein GI | 258405917 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2199] FOG: GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 0.504833 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATGGACG TACCTCCAAA TGCCCCGAAG ACCGATCTCG ACGAGGCGTT CCAGCAGTTT
CTTGCCGTGC AGGAAGCTTT TCCCGATCCG ATTCTGGTAG TGAACGAGGA TGGGGTTTAC
GAGGCCGTTA TGGGTGGACA GGCCCGGGGC CTTTACGACA GCGGGCACAA TCTTGTGGGC
CACGCCATGC ACGATGTTTT GCCCCAGGAA AAGGCGGACT GGTTCCTGCA GGTTGTCAGG
CAAGCCTTGA ACGAACACGA ATTGCAGATC GTCGAATACG CCCTTTCTCC CGACGAGGTT
ATCGATTCCC CTTCAGATGG CCCTGAACAC GCGCAATGGT TCGAAGGCCG TGTTTATCCC
ATTCACCGGC CTGCGGGACA GAAACAGGCG GTGGTCTGGG TCGTTTTGAA CATGACCAAG
CGCAAGAAAC TCTTTGAGGA ACTCCAGGCC CAGTCCGAGC GGGACGCCTT GACCGGGGTG
TACAACCGCT TGGCATTTAC CCGCTATTTC GACCAATACA AATACAACGC CCAACGGTAT
CGGCGTCCGC TGTCACTGCT GGTGCTGGAC CTTGACGAAT TCAAGGGGCT CAATGACCGT
TTTGGGCACG CCGCGGGCGA TGTCGTCCTG CAATCCCTGG CCGAAGCACT CAGGTCACGC
CTGCGGCAAA CGGATATCCT GGCCCGCCTC GGAGGGGACG AATTTGCCAT ACTGCTTCCT
GAGACCCCCT ACGGCGCGGC GGTGGAATTG ATGGGTCGCT TGCGCAAAGC GCTCAATGCC
ATGATCGTGC CTTTTGAATC GGAAGAGATA CCGGTGCGCG TCAGTCTGGG GGTGAGTACT
TTGTCCCTGA CAGACAAGGA ATTCGAAGAA CTTTTCGCCC GCGCTGACGC CAATATGTAC
AAACACAAAC GTATCCGGCA GAAAAAGGAG CACCAGTTTC CACGGAGCGC TGTGCCGACG
TACGAAATCG AATAG
|
|---|
| Protein sequence | MMDVPPNAPK TDLDEAFQQF LAVQEAFPDP ILVVNEDGVY EAVMGGQARG LYDSGHNLVG
HAMHDVLPQE KADWFLQVVR QALNEHELQI VEYALSPDEV IDSPSDGPEH AQWFEGRVYP
IHRPAGQKQA VVWVVLNMTK RKKLFEELQA QSERDALTGV YNRLAFTRYF DQYKYNAQRY
RRPLSLLVLD LDEFKGLNDR FGHAAGDVVL QSLAEALRSR LRQTDILARL GGDEFAILLP
ETPYGAAVEL MGRLRKALNA MIVPFESEEI PVRVSLGVST LSLTDKEFEE LFARADANMY
KHKRIRQKKE HQFPRSAVPT YEIE
|
|---|
| |