Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dret_1758 |
Symbol | |
ID | 8419599 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Desulfohalobium retbaense DSM 5692 |
Kingdom | Bacteria |
Replicon accession | NC_013223 |
Strand | - |
Start bp | 2023374 |
End bp | 2025275 |
Gene Length | 1902 bp |
Protein Length | 633 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 645038342 |
Product | deoxyxylulose-5-phosphate synthase |
Protein accession | YP_003198620 |
Protein GI | 258405878 |
COG category | [H] Coenzyme transport and metabolism [I] Lipid transport and metabolism |
COG ID | [COG1154] Deoxyxylulose-5-phosphate synthase |
TIGRFAM ID | [TIGR00204] 1-deoxy-D-xylulose-5-phosphate synthase |
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Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 23 |
Fosmid unclonability p-value | 0.805776 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACAGTAT CCTCATCATC TTCCATCCTC CAGGCGATCC AGTCTCCGCA GGATGTTCAG GGGTTGTCCC TGACGGAACT GACGACCCTG GCTGAAGAAT TGCGGCAGGC CATTATTGAG GTCGTGTCCA CCAACGGCGG ACATCTGGCC CCTTCACTCG GGGTCGTGGA ATTGACCCTG GCGCTGTTAA AGAGCTTCAA CCCGGACCAG GACCGCTTTG TCTGGGACGT GGGGCACCAG GCCTATGCCT ACAAGCTCCT GACCGGCCGC CGGGACCAAT TCCATACCTT GCGCTGTCTG CACGGGGTCA GCGGATTCCC CAACCGCAGC GAAAGCCCTT ACGACCATTT TGGCGTCGGC CATTCGAGCA CCTCGATTTC CGCAGCCCTG GGTATCGCTG TGGGGCGTGA TCTGGCGCAA CAATCGAATA AGGTGCTGGC GGTCATCGGC GACGGATCCA TGACTGCGGG GCTGGCCTAC GAGGGGCTCA ATCAGGCTGG CGGGCTGGAC CGTGATCTGG TCGTGGTTCT CAACGACAAC GAGATGTCTA TTTCCAAGAA TGTCGGCGCC CTGTCCTCAT TTTTGAGTCG GCAGCTCTCT TCGCGCTGGC TGGTGCGCTT CAAGCGTGAA CTCGAAGGGC GCTTGCGGCA GATTCCCCGG ATCGGCGAGG ATCTGGTGAC CTACGCCAAG CGCAGTGAAG AGTCGTTCAA GGGGCTCTTC ACGCCGGGAA TGCTTTTTGA AGCCTTTAAG TTCAATTATC TGGGGCCTAT TGACGGCCAC GACCTGCGGC AGATGACTGA TGTCTTCAAG CAGGTACGTT CTTTGGACGG GCCGGTGCTC GTTCATGTCC TGACCCAGAA GGGGCGGGGG TATACCCCGG CCGAGGACAA CCCGACCTAT TTTCACGGCG TAGGGTGTTT CGAGCCGGAG ACCGGAAAAT CGAAAAAGAT TTCCAGCTGC AGCCTGCCTC CATATACGAA AGTCTTTGGA CGGACACTGA GCCAATTGGC CCGTCAAAAC GACCGGATCG TGGCTATTAC CGCTGCCATG CCCGAGGGCA CCGGCCTTGG AGAATTCGCC GAAGAGTTCC CGGACCGATT TTTTGATGTC GGCATCTGCG AACAGCACGC CGTGACCTTT GCCGCCGGGT TGGCTACTGA GGGCTATCGG CCGTTTGTGG CCATTTATTC GACGTTTTTG CAACGTTCTT ATGATCAAAT CGTCCATGAT GTGTGTCTGC AAAACTTGCC CGTGACTCTT TGCCTGGACC GAGGTGGTCT GGTCGGCGAA GACGGGGCGA CCCATCACGG GGCCTTTGAC CTCTCCTTTT TGCGCCATAT CCCGAATCTG GCGGTCATGG CCCCTAAGGA TGAGCCCGAA CTCCAGGACA TGCTGGCCAC GGCTCTGGCC CATAATGGAC CTGTGGCGGT ACGCTATCCT CGGGGTGTGG GACCCGGCCA TGCCATAAAG GACAGCGCGA CCGCTCTGCC GTGGGCTCGG GGTGAATGGC TCCGCTCCGG CAGCGATGCC GTGGTGCTGG CCATCGGTAG CCGTGTCGAA CCCGCCCTGG AAGCCGTAGC GCAGCTTGCT GAGGCGACTG GGAAAGAGAT CGGGGTCCTC AATCTCCGCT TCGTTAAGCC GTTGCCCGTC GAGGAAATCT TGGAAGCGGC CCGGCAGAGC AGGCGCCTTC TGGTGGTCGA GGAAAATGCG GCCATCGGGG GAATGGGGTC GGCCGTGCTG GAATGTCTGG CTGAAAACGA CGCCCTGGAC GGTATCCGGG TTCGTCGGCT CGGCCTGCCC GACGCTTTTG TCGGGCACGG GCCGCAAAAA GCGCTGCGGG CCGAGGTTGG CCTTGATGCC GCTGGTATCA GCAAGGCATT GCGGGACTTT TTGAGCGAAT AG
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Protein sequence | MTVSSSSSIL QAIQSPQDVQ GLSLTELTTL AEELRQAIIE VVSTNGGHLA PSLGVVELTL ALLKSFNPDQ DRFVWDVGHQ AYAYKLLTGR RDQFHTLRCL HGVSGFPNRS ESPYDHFGVG HSSTSISAAL GIAVGRDLAQ QSNKVLAVIG DGSMTAGLAY EGLNQAGGLD RDLVVVLNDN EMSISKNVGA LSSFLSRQLS SRWLVRFKRE LEGRLRQIPR IGEDLVTYAK RSEESFKGLF TPGMLFEAFK FNYLGPIDGH DLRQMTDVFK QVRSLDGPVL VHVLTQKGRG YTPAEDNPTY FHGVGCFEPE TGKSKKISSC SLPPYTKVFG RTLSQLARQN DRIVAITAAM PEGTGLGEFA EEFPDRFFDV GICEQHAVTF AAGLATEGYR PFVAIYSTFL QRSYDQIVHD VCLQNLPVTL CLDRGGLVGE DGATHHGAFD LSFLRHIPNL AVMAPKDEPE LQDMLATALA HNGPVAVRYP RGVGPGHAIK DSATALPWAR GEWLRSGSDA VVLAIGSRVE PALEAVAQLA EATGKEIGVL NLRFVKPLPV EEILEAARQS RRLLVVEENA AIGGMGSAVL ECLAENDALD GIRVRRLGLP DAFVGHGPQK ALRAEVGLDA AGISKALRDF LSE
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