| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dret_1735 |
|---|
| Symbol | |
|---|
| ID | 8419572 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfohalobium retbaense DSM 5692 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013223 |
|---|
| Strand | - |
|---|
| Start bp | 1998152 |
|---|
| End bp | 1999708 |
|---|
| Gene Length | 1557 bp |
|---|
| Protein Length | 518 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 645038315 |
|---|
| Product | protein of unknown function DUF814 |
|---|
| Protein accession | YP_003198597 |
|---|
| Protein GI | 258405855 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1293] Predicted RNA-binding protein homologous to eukaryotic snRNP |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 0.676814 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAAGCCA ATTTCTTCCG CTATCTTGTG CCCGAACTCC ATCAGAAGGT GCAGGGACAG
CGGGTAGACA AGGTCTATAT CCCCTCTGCC ACGCTTTGGA CGATCAAGTT CGCCTCGCAC
AGTCATGTCT TGGCGGTGGT GGACAAGAAA ATCGGCACAT TGTTCTGGAG TCCAACTCGA
CCGCCCAATC CGGAGACGCC CTCTGGGGGC GCCCAGTGGC TGCGCAAACG GCTACGTGGA
CGGCGGTTGG ACTCCTATGT TCTTGACTGG CCCCACCGCC GCGTTGCGTG GTGGGTGGTG
CCTGATGGGT ATTGGCTTAT GTGGGACGTC TGCGCGGGGC CCACGTGTCT CGAAGCCTTG
CCCGACGGGT TCGGAGCCTC TCCTGCGTGG CCAGATTCCG TGGAACACGC CATGGATTCT
CAGAGCTGGC GCCATTTTCC TCAGCTATCC CCTCCGTTAC GCTCGACCCT CAATTCCCTG
TCTCCGGACG AGGCCGCCGC GGTATTGGAT CGCTTGGCGA CGGGAGTTCC TGACCGATTC
TATTGTTATT ATTATCCTGA CGGCCGTGCT GTGGCGTTGC CCTGGCGTTT GCCGGAGCCG
CTGCGTACCT CGGTGCGGGA AGTCGAGGCC GATTCCGCTG TTGAAGCGGC CCGATTGGAA
GGCGAGGCAG CACTTCACAG CCGCCTTGGG GCCCAGCGGC AGGGAAATCG AGAACATAAG
CGGGCACGGA AAAAGCTCGA GCGGCAATTG CGCCATGTCC ATGAAGACGA ACACCGTTTG
CAGGAAATGA TCGCTCTGGC TGAGGATGCC CGTTTTCTGC AGATCAATCT CCACCGGGTG
GATAAAGATG CCAAGCTCGA CCATGTCGAG GGGTATGACG AGAACGGCAC GTGGCGACGC
CTCGCACTTG ACCCGGCCTT GAACGTGCAA GAGAATATGC AACGGCTGTT TACGAAAAGT
CGCAAAGGCC GGCGGGGGAT TCCGCATGTG CGCCAGCGTA AAGAGATGCT GGAGCAGGAA
TATGCCGCTT TGCTCCACCG CTCGGGGGAA ATGGACCAGC AGGATCGGGA CGACAAACAA
CCTTCCACAA CAACCGTGAA GCGCTCAGTG CCGCGAATTC CGTCCCGTTT TCAAGGAGTA
GCTGCGCACG CCTTTCGCAG TTCCGATGGC TTTCTTGTAT TGCGCGGCAA GAACAAGAAG
GCCAATCACG CTCTGCTCAC CAAGGCGGCC CGCCCCTTCG ACCTCTGGCT GCACACTCAG
GGCGGGCCCG GGGCGCATGT GATTTTGGTC CGCGACCACC AAGGGCAGGA GGTTCCGCAA
CGGAGCCTGG ATGAGGCCGC ATGTCTGGCC GCCCTGGCCA GTCACGCCAG TCAGGCGGAC
AAGGCGGAAG TGATGGTGGC GCTGGTGCGC AATGTGCGTC CTGTCAAAGG GGCGGCGCCA
GGCCAGGTTC GGGTGGATGT GGTCCAACAG ACCCTTCTCG TGACCGTGGA CGCCGCTTTG
GAACAACAAT TGCGGCTTGA TGTTCCGGGT GCGGGAACCA GTTCGTTTGC GAAGTAG
|
|---|
| Protein sequence | MEANFFRYLV PELHQKVQGQ RVDKVYIPSA TLWTIKFASH SHVLAVVDKK IGTLFWSPTR
PPNPETPSGG AQWLRKRLRG RRLDSYVLDW PHRRVAWWVV PDGYWLMWDV CAGPTCLEAL
PDGFGASPAW PDSVEHAMDS QSWRHFPQLS PPLRSTLNSL SPDEAAAVLD RLATGVPDRF
YCYYYPDGRA VALPWRLPEP LRTSVREVEA DSAVEAARLE GEAALHSRLG AQRQGNREHK
RARKKLERQL RHVHEDEHRL QEMIALAEDA RFLQINLHRV DKDAKLDHVE GYDENGTWRR
LALDPALNVQ ENMQRLFTKS RKGRRGIPHV RQRKEMLEQE YAALLHRSGE MDQQDRDDKQ
PSTTTVKRSV PRIPSRFQGV AAHAFRSSDG FLVLRGKNKK ANHALLTKAA RPFDLWLHTQ
GGPGAHVILV RDHQGQEVPQ RSLDEAACLA ALASHASQAD KAEVMVALVR NVRPVKGAAP
GQVRVDVVQQ TLLVTVDAAL EQQLRLDVPG AGTSSFAK
|
|---|
| |