Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dret_1720 |
Symbol | |
ID | 8419556 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Desulfohalobium retbaense DSM 5692 |
Kingdom | Bacteria |
Replicon accession | NC_013223 |
Strand | - |
Start bp | 1980489 |
End bp | 1982825 |
Gene Length | 2337 bp |
Protein Length | 778 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 645038299 |
Product | primosomal protein N' |
Protein accession | YP_003198582 |
Protein GI | 258405840 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG1198] Primosomal protein N' (replication factor Y) - superfamily II helicase |
TIGRFAM ID | [TIGR00595] primosomal protein N' |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.31928 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 22 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGAAACCT TATGGGATGT CGCCCTGCTT GGGGCTCCCT TTACGACGTT GACCTACACG CTTCCCGAGG GCTTCCCCCA CTCCCTGTGG CAGCCCGGGC TCCGGGTGTG GGTCCCTGTC GGGCGTGCGC TGCGCCCTGG CGTTTTGCTC CGTCCCGCCT CGTCCTCCCT TGATCCCGAT AAACTCAAGC CCCTTTTCTG GCCGCTGGAA CGCGCTCCTT TGCTCTCCCG GGATTATCTG GAGATGATCG AGGAGATGGC CAAACGTGTC GTGCAGGACT CGGGAGCAAT CCTGGCCGCC GCTTTGCCTG CCGGACTCCG TAGCGCCAAG GGAGCGCTTG TGGCTGCAGG GAACAAACGA GAGCGACTTT CGCTTGACGC CCTGCGCCGG CTCTCAGAGA CGGAACGCAA GCGCTGGGCC GAACTCTGGA GCGAGGGCCA AGCCGAGTGG GTGTTGCACG ACAGCGAACA CCGCGACAGT CTGCAGTGTT TTGTAAAACA GGATCCCCCC TGGCAGGTCC GCCCGCAAGC AAAGCGCCAG ATCGCTGTGC TCGATTACCT GTGGGACAAA GGGAGTGTGA ACAGGGGCAG GCTGCGGCAC GAGCTTGGTA ATTGGGCCGG CCCGGTCCTT GACACCTTGT GCGATAAGGC GTTGGTGGAG GTCGCTGCTC CGGAGGAATG CGAGCCAGAC TCGTGCTCGG TCGCCTCAGG GCTGGAAGAT CTGGTCCTGA GTGCGGAGCA GAGCCGAGCC CTGGAGGGAT TGCGCCATGC CGCGACCCAG CACCAGGCGG CCCTGGTCCA CGGAGTGACC GGCAGCGGCA AGACCGTTGT CTATGCCCAT CTCGCCCGGG AGTGGCTGGC GGGCGGGCGC AGTGTCCTCT TGCTGGTCCC AGAGGTGGCC CTGGCCCGGC AGACCCTGGC GGCAGTGCGC CATTTCCTCC CTGGTGAGAG GGTGTATCTC TACCACGGCT ACCAGTCCCC CAAACAGCGG GAAAAGGTCT TTACCGAACT TGCCGGGCGC GATGAGCCGT GTGTAGTCGT CGGAACCCGT TCCGCCCTGT TTTTGCCCCT GCGTGACACC GGCCTTGTGG TCCTGGACGA AGAACATGCC GAGTCGTTTA AACAGGATGA GCGCTTGGTC TATCAGGCCA AGGAACTCGC CTTTTTCCGG GTGCGACAGA GTCAGGGGTT CCTGGTCCTC GGCTCTGCCA CACCGGATCT GAAGACTTTT TCCGCAGCTC GGGAAGAGCG GCTGCCCAAG GTGACCCTCC AGGAGCGGGT CGGTGCCAGC CAGCTGCCGG AGATCGATCT CGTTGATCTG CGTGAGGAGC CACCGGTTGC CGGTCCTTTT GCGGCCTCGG TCCACCAGCG TTTGCAGGAG GTCCTTGAGC GCGGCGAACA GGCAATTATC ATGCACAACC GGCGCGGCTA TGCCCCTTTG GTTTACTGCA CCGGTTGCGG CGAAGTGGCC CGGTGTCCGG ATTGTGAGGT GGGGTTGACC TACCACAAGC GGCGCCAGCG GCTTGTCTGT CATTATTGCG GTCAGCACAA AGAGTTTCCT TTTGTATGTC CGAAATGTCG CGCCAGCCAG TTCGTCCCCA TTGGCGAGGG GACCGAACTC ATTGAGGAAT ACTTGTCGAC CTCGTTGCCG GCCGGGGTGC GGGTAGATCG TCTCGATCGC GACAGCACCC GGCGGCAAGG GCGGCTGGAG GAGATCCTGG CCGCATTCAG CCGCGGGGAG TCGCAGGTGC TCGTTGGGAC CCAGATGCTG AGCAAGGGCC ACCATTTTCC CGGGGTAACC CTGGCGGTGG TCGTGGACGG CGATCTGGGG CTCAATCTGC CCGATTACCG GGCAGCGGAG AGGACGTTTC AGATGCTCGT CCAGGTTGCC GGCCGTGCGG GGCGGGGGGA CAAACCAGGC CATGTCCTGA TTCAGACCCG GGATCCGGAG CATTATTGTT GGGAATTTGT CCGGCGCGGC GATTATGAAG GGTTTTTCGA GCGTGAAGCC GCACTGCGGC AGCGGCTGTC CTATCCGCCG TATACCAAGT TGGCCTTGGT GCGTTTCAGC CTCCCGACTG AATGGGAGCA AGGGGCGGAA ACGATTAGGG AAGTAGGGCG ATTTCTCAGG CAGGCCGGCA AGGCCGCTGG ATTACGCGTA CTCGGTCCTG CTCCGGCCCC TTTGGGACAA TTGCGGGGGC GGCTACGGTA CCATTGCCTG CTCAAAGGGG AATCCTGGCA GGAGATGCGC ACGGTGTATC AGCAGGTGCG GCACCGCTTT TTTCGCGTCC GGCAACTTCG AATACAACTC GATCTTGATC CAGTGCACAT GATGTGA
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Protein sequence | METLWDVALL GAPFTTLTYT LPEGFPHSLW QPGLRVWVPV GRALRPGVLL RPASSSLDPD KLKPLFWPLE RAPLLSRDYL EMIEEMAKRV VQDSGAILAA ALPAGLRSAK GALVAAGNKR ERLSLDALRR LSETERKRWA ELWSEGQAEW VLHDSEHRDS LQCFVKQDPP WQVRPQAKRQ IAVLDYLWDK GSVNRGRLRH ELGNWAGPVL DTLCDKALVE VAAPEECEPD SCSVASGLED LVLSAEQSRA LEGLRHAATQ HQAALVHGVT GSGKTVVYAH LAREWLAGGR SVLLLVPEVA LARQTLAAVR HFLPGERVYL YHGYQSPKQR EKVFTELAGR DEPCVVVGTR SALFLPLRDT GLVVLDEEHA ESFKQDERLV YQAKELAFFR VRQSQGFLVL GSATPDLKTF SAAREERLPK VTLQERVGAS QLPEIDLVDL REEPPVAGPF AASVHQRLQE VLERGEQAII MHNRRGYAPL VYCTGCGEVA RCPDCEVGLT YHKRRQRLVC HYCGQHKEFP FVCPKCRASQ FVPIGEGTEL IEEYLSTSLP AGVRVDRLDR DSTRRQGRLE EILAAFSRGE SQVLVGTQML SKGHHFPGVT LAVVVDGDLG LNLPDYRAAE RTFQMLVQVA GRAGRGDKPG HVLIQTRDPE HYCWEFVRRG DYEGFFEREA ALRQRLSYPP YTKLALVRFS LPTEWEQGAE TIREVGRFLR QAGKAAGLRV LGPAPAPLGQ LRGRLRYHCL LKGESWQEMR TVYQQVRHRF FRVRQLRIQL DLDPVHMM
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