Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dret_1694 |
Symbol | |
ID | 8419525 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Desulfohalobium retbaense DSM 5692 |
Kingdom | Bacteria |
Replicon accession | NC_013223 |
Strand | - |
Start bp | 1950087 |
End bp | 1953977 |
Gene Length | 3891 bp |
Protein Length | 1296 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 645038268 |
Product | Tfp pilus assembly protein tip-associated adhesin PilY1-like protein |
Protein accession | YP_003198556 |
Protein GI | 258405814 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG3419] Tfp pilus assembly protein, tip-associated adhesin PilY1 |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.0847615 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 11 |
Fosmid unclonability p-value | 0.00494316 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
| |
Sequence |
Gene sequence | ATGTCATTGC CCTCGATCGT TTTTAAAGCA TCGCGGTGGA CAATAGTCTT TGCATTGTGG GCTATGATTT TAGGTTTCGC CTCGGTTGCT TTTAGCGACA ATGGCGATCC AGAATTGCTG TGTTCCAATT ACGAAGCCAA CCCTCCGTTC ATTGCCTCCG GGGTCATGCC CTCGACGCAT ATTATTCTGG ATAATTCGGG TTCTATGCAT GAGTTTGCGT ACCAGGAAGA ATTGGCCTGG TTTGATTACA GTTCAACCAC TAGCTTTGCG GCTCGGTCCG GATTCAACGC GACCCAAGCG TATACGGGCT ATTTTGATCC GTACGAGTAT TACAGTTACA ATTCCACGGA AGGGTATTTT TCCGTGGACA CCCAAAATGG CCCCTGGAGT GGGAACTTTT TGAATTGGGT GTCCATGCAC CGGATCGATA TTGCCAGGCA TGTCATGACC GGGGGGAAAT ACAATTCCAC CACAAATACC CTCGAGGTTC AGATTTCGGA TTCCTCCGAT AGGGGCCGTT TCAAGGTTTT CGACGATAGC GAAACACGCC TCGATTTGAA TGGGCAAAAC CGGCATATGA CGCCCCACAC GGAAGAGATC GTTTTCAGTT TGCCGGTTAG CGGCATCCAT ACCGATTGGT ATGTATACAG CGCTACCTCA TCAGGAGATG ACTGGTCCAA TGATGGTCAT ATTGCCACGT ACGAGCATCT GCAGGTACAC CAGGCACAGG CACCAAAAGG TGTGCTGGAT AATATTAACG ACCGCATGCG TTTGTCCTTA TTTGTTTTTG ACCGTACCGG GGACACCAAG GACGGGGCGC ATATGCTAGA ACCCATAGGG GCCAACGCCA CGGCAATAAA AGAAGCGATC AATGGGATAT ATCCGAGCAC ATGGACGCCA CTTGCCGAAT CGTTACGCAC TGTGGTGGGG TATGTGCAAC AGTCTGACAC CGCCACCGCA AGCACCGGAC CATACTATGA AGGCGACGAT AGTTACAGCC TGAGCCCTGA GGACGATCCG TTTTATTTCC CCTCCGAGGC GCAGGACATC TATTGCTCCC AACAAAACGT CATCCTCATC AGCGATGGCG AGTCGACCAT GGATGAGCAA ATCGCTGAGA ATTTGCATGA CTATGACAGC GATAACAATG ATCCGGGCGA CTATCTCTCC AGCGGCACCG ATTACCTCGA CGACGTGGCC CTGTGGGCGC ACACCACGGA CTTGCGCTCG GATCTGGCGG GCAATCAGAC CGTGGATTTG TATACCATTT CCATATTCGG CGGCGGGGAA GACCTGTTGC GCGACGCAGC CGTGAACGGT GGCTTTGTGG ACCTGGACGG CGGTGGCCAG CCCACGGCCT CGAGCAATGG GACCTCCGAA TTCGATCGGG ACGGCGACGG CGAGCCGGAT CATTTTTTCC GCGCCGAAAC CGGGGAGGAG TTGGAAGGGG CCTTGATCCA GGCCTTTTCC TCGATTTTGA ACCGATTGTC CTCCGGCTCC GCTGCTTCCG TTATTTCAAC GTCCCGTAAG GGAGGAGGGG CTATCTTCCA GGCGGTGTTC TGGCCGAACC TGATCGACGA GGAAGGCAAC CAGGTCTCCT GGGTGGGTGA TGTCCATTCG CTCCTTGTGG ATGATTACGG CAATCTCTAC GAGGACGACG GGTCGGTTGA ATTCGGTCTT GATGACGGGG ACTCGTCCGT TATTTTGTAC TACGATCCCA ATGCTGAAAA GACCAGGGCG TGCTCCGACG GCAAAGTGCT TAACGGCATC TGCAACGGCA CGGCCAAAGA CATCAACGAA GTGGAGTTCT TGTGGTCGGC CATGGATTGG CTCAATCGGG GCGGAACGCT CTTTGATGCT GTGAATCAGC GAACGGAGTA TACTGTCGAC AGTACAACCG ACAATGAGCG GCGGTATATG ATGACCTGGG TCGACGCAGA TACCGATGGT GTTGTCGATG ACGGAGAGTA CCAGCCTTTC ACGACTGACC TTGATGTGGA TTATTGCAGC AATGCGACTA TCAATTGGGT TCGCGGACTG GACCAGGACG GTTTGAAAAG CAGAGAGTTC TGGTTCGATA CCAACAACGA CGGGGTGGCG GACGATCTTG GGACATGGCG TCTCGGCGAT GTGGTCCATT CCTCGCCCAC CGTGGTCGGT CCGCCCATGG AAAATTATGA TTTTTACTGG GGGGATCGGT CCTATTCCGA GTTTTACGGA AAGTACCGCG ACCGTCGTTA TATGGTCTAT TTTGGCGGCA ACGACGGCAT GCTTCATGCC GTGAACAGCG GATTTTACTC CTCCAACGAC AAGACCTTTT ATAAATCCCA CAATCCCGGG ACCGATTCCT ATTCCCAGTC CGGCGCTGCG GCTGATCTTG GTGCTGAGAT GTGGTCCTAC GTACCGTACA ATTTGCTGCC CCATCTCGAA TGTCTGACGA AAGACGACAG CAATCATGAA TATATGGTCG ACCTCCGGCC ACGGGTCTTC GACGTCAAGA TTTTCTTTGA TGAAAACGGC GATCCCATTG ACGCCGATCA CCCCGGCGGA TGGGGAACGA TCCTTGTCAG TGGTATGCGC TTTGGCGGGG CGGGCACACC GACCGAATTC GACCAGGACC GTTTTTTCGG GTCTTCGTAT TGTATTTTTG ATATCACTAA CCCGGAAAAA GCCCCGACAT TTTTAGGTGA AATCACCTAC GATGGAGACG ACAGCCTGGA AATGGGCTAC TCCATTACCA CCCCGACGGT GGTACCGGTG AAAAGTGGTT CTGGTCTGCA GTGGTATCTC ATTCTGGGAA CCGGACCGGA TAGCCTGGAG GGGACGAGTG AAGAAAGTGC CCGTGTTGTC GTGATTCCCC TGTTAGAAAT CGTGGATAAC AACGGCGGAC CGGATTCCGA TTTTTCCTGG CAATTGCCCG GATGCTCCAG TTGTGATCCC AGCCCCACAG AGGCTGGCTT TATCAAGGTT ACGTCCCAAG GGGGGGCCGT CGGGACCGAT TTTGTCGCTC TGGACTATGA TTTCGACTTT TTTACCGATA TTTTGTATTT CGGGACTGTC GAAGAGAAAA AAGGGGATTG GAGCGGCGGC CTTTGGCAAT TGAAAATTGA AGATGAGCCA GACCCCGGTA AATGGGAAGA TAAAGAAAAA ATCCATGTGG ACAGTCCAAT AACAGGGGCT CCAAATATTG GTTTTTATGG CGAGAACGTC TGGGTCTATT TCGGAACAGG AAAGTTCTGG AATGTAGCTG ATAAAACAGA TACCGATACA AATGCGTTTT ACGGCATCAT AGAGCCAAAG CAAACAACAG GTCCTGCTTA TAATTTTAGC ACTATTACAG ATTCAGGACT TGTGGATGTG ACTGATATAC GTGTTGAAAA TGGGTCTTCA GATTTATTGT GCGTTGATGG TTCTACAAAC TGCCTGCCAA ACAATGGGGC CACCGACACG TTTTACGAAC TCGTTGACCA TATTACAAAT ACGAGCAATG TGGATGGATG GAAGCGCACA TTGACCGGTG ATGGGGAGCG AGTCATTGGT CAGCCCACGC TTCTCGGTGG AGTTGTGACC TATTCGTCGT ATTTGCCGAA TGATGATGTC TGCCAGGCGG AAGGAAGAAG TAATCTTTAT GCCCTGTATT ATTTGACAGG GACTTCTTGG GTTGAAAATG TCTTTGGTGA TCAGGATCCC AATGAGCCAT ATATTGGGTT TATCAAGAGC CTGGGCAAAG GCATGAGTAT CACGCCGAAT CTCCACCTGG GGAAAGAAAA GGGGACGAAG GTTTTTGTCC AGTCGAGTAC CGGAGAGATT CTCGAAATCA ATCAACCGAA CCTTCCGATC AAGGATTTTC GCTCCGGTTC CGGGGGCTGG CACACCCATG ATCTGGAATA G
|
Protein sequence | MSLPSIVFKA SRWTIVFALW AMILGFASVA FSDNGDPELL CSNYEANPPF IASGVMPSTH IILDNSGSMH EFAYQEELAW FDYSSTTSFA ARSGFNATQA YTGYFDPYEY YSYNSTEGYF SVDTQNGPWS GNFLNWVSMH RIDIARHVMT GGKYNSTTNT LEVQISDSSD RGRFKVFDDS ETRLDLNGQN RHMTPHTEEI VFSLPVSGIH TDWYVYSATS SGDDWSNDGH IATYEHLQVH QAQAPKGVLD NINDRMRLSL FVFDRTGDTK DGAHMLEPIG ANATAIKEAI NGIYPSTWTP LAESLRTVVG YVQQSDTATA STGPYYEGDD SYSLSPEDDP FYFPSEAQDI YCSQQNVILI SDGESTMDEQ IAENLHDYDS DNNDPGDYLS SGTDYLDDVA LWAHTTDLRS DLAGNQTVDL YTISIFGGGE DLLRDAAVNG GFVDLDGGGQ PTASSNGTSE FDRDGDGEPD HFFRAETGEE LEGALIQAFS SILNRLSSGS AASVISTSRK GGGAIFQAVF WPNLIDEEGN QVSWVGDVHS LLVDDYGNLY EDDGSVEFGL DDGDSSVILY YDPNAEKTRA CSDGKVLNGI CNGTAKDINE VEFLWSAMDW LNRGGTLFDA VNQRTEYTVD STTDNERRYM MTWVDADTDG VVDDGEYQPF TTDLDVDYCS NATINWVRGL DQDGLKSREF WFDTNNDGVA DDLGTWRLGD VVHSSPTVVG PPMENYDFYW GDRSYSEFYG KYRDRRYMVY FGGNDGMLHA VNSGFYSSND KTFYKSHNPG TDSYSQSGAA ADLGAEMWSY VPYNLLPHLE CLTKDDSNHE YMVDLRPRVF DVKIFFDENG DPIDADHPGG WGTILVSGMR FGGAGTPTEF DQDRFFGSSY CIFDITNPEK APTFLGEITY DGDDSLEMGY SITTPTVVPV KSGSGLQWYL ILGTGPDSLE GTSEESARVV VIPLLEIVDN NGGPDSDFSW QLPGCSSCDP SPTEAGFIKV TSQGGAVGTD FVALDYDFDF FTDILYFGTV EEKKGDWSGG LWQLKIEDEP DPGKWEDKEK IHVDSPITGA PNIGFYGENV WVYFGTGKFW NVADKTDTDT NAFYGIIEPK QTTGPAYNFS TITDSGLVDV TDIRVENGSS DLLCVDGSTN CLPNNGATDT FYELVDHITN TSNVDGWKRT LTGDGERVIG QPTLLGGVVT YSSYLPNDDV CQAEGRSNLY ALYYLTGTSW VENVFGDQDP NEPYIGFIKS LGKGMSITPN LHLGKEKGTK VFVQSSTGEI LEINQPNLPI KDFRSGSGGW HTHDLE
|
| |