| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dret_1684 |
|---|
| Symbol | |
|---|
| ID | 8419515 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfohalobium retbaense DSM 5692 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013223 |
|---|
| Strand | + |
|---|
| Start bp | 1936238 |
|---|
| End bp | 1937092 |
|---|
| Gene Length | 855 bp |
|---|
| Protein Length | 284 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 645038258 |
|---|
| Product | protein of unknown function DUF178 |
|---|
| Protein accession | YP_003198546 |
|---|
| Protein GI | 258405804 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1427] Predicted periplasmic solute-binding protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 0.37152 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 0.0545978 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCAACCG CATTGCGCAT TGGACGCATC GATTACCTCA ACGTCCAACC TTTTTTTGCC
GCGCTGGAAC ACCAATTCTC CCAGACGAAC GAAGTCGCCT ACCACCGGGG GCATCCTTCG
GAACTCAACG CCGGACTGAA AGAAGGGACC CTGGACCTCG CGCCTTCCTC CAGTTTCGAG
TACCTCCGAA ATGCCGAGCA CTACTCTCTG CTGCCTGGGG CGAGCGTCAG CGCCCGGGGC
GCCGTGCAAA GCGTCCTTTT CGTCTCCCCG ATTCCTCTTG AACAAATACA GGGCGGCCAG
AAAGTGCTTC TGACCACGGC CTCGGCCTCT TCTGTGGCTT TGCTCAAAAT TTTGTGGCAT
TTTGCCTGGG AATTGGAGCC TCCCCAATGG GGGACCGTCG ATCCCGGCCA AGGCATTGCA
AGTGGCACGC CCTTTCTGGA GATCGGGGAC GCTGCTTTGC GCCTTTTTTG CAACCCACCT
GCAGGATGGT ACGTCTACGA TCTCGCCGAG GCCTGGCACC GTTTCACAGG CCTGCCTTTT
GTCTTTGCCG TCTGGATTGT CCGCAGCGGC CTGGACCCGA GCCACAATGC GATGTTGCAC
CAGGTCGCCC GAACCATTGC CGATGTGAGC GCACACTGGC CGGGGCCGCT TGAGACCCTG
CTCGAACAGA CCACCCGCCC CAATTGGCTC GACGCGGCAA GCTTGCGCGC CTATTGGCGC
AACCTTGTCC CCTGCCTCGG CCCAGAGGAA CAGGCTGGCC TGCTCCTTTT CGCCAAGTAC
GCCACCGAGC TGGGGCTGCT GCCCGGTACT CCAGGGCTCA ACTGGGCCCT GACGCCGGAC
TCCCCCACCG CCTGA
|
|---|
| Protein sequence | MPTALRIGRI DYLNVQPFFA ALEHQFSQTN EVAYHRGHPS ELNAGLKEGT LDLAPSSSFE
YLRNAEHYSL LPGASVSARG AVQSVLFVSP IPLEQIQGGQ KVLLTTASAS SVALLKILWH
FAWELEPPQW GTVDPGQGIA SGTPFLEIGD AALRLFCNPP AGWYVYDLAE AWHRFTGLPF
VFAVWIVRSG LDPSHNAMLH QVARTIADVS AHWPGPLETL LEQTTRPNWL DAASLRAYWR
NLVPCLGPEE QAGLLLFAKY ATELGLLPGT PGLNWALTPD SPTA
|
|---|
| |