Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dret_1648 |
Symbol | |
ID | 8419479 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Desulfohalobium retbaense DSM 5692 |
Kingdom | Bacteria |
Replicon accession | NC_013223 |
Strand | - |
Start bp | 1898304 |
End bp | 1901834 |
Gene Length | 3531 bp |
Protein Length | 1176 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 645038222 |
Product | multi-sensor hybrid histidine kinase |
Protein accession | YP_003198510 |
Protein GI | 258405768 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system |
TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.883005 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 27 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCCCGTG AATCGTTTTT GCCGAATACA CCTGAGAAAC CGGTTCGATT GTATGCCGTT CTCGGGCTGT GCGTGTTGGG CATTTGTATC GCTATTATTG TTACCTGGTC CACCGGCCGG CGGATGACGG TCCATCACGC CCGGCTGGTG CACACGGCTA CGGAGATCAA GTTTCAAGTC TCTCAGGCCC ATATCTGGCT GGAAGAGGGA CTTCTCGGTG ACCCGACGGT AGAGCGGGAC ACGTTTATGA CCCATCTGGA CCAGGCCGAG GCCCTGGCGG TAGCCATGCT CGAAGGGGGA ATGGGGGCCG GGGAGCCGTT GCGCCCGGTC CAGACTGCCG GACTCCGCCG GGAGATCCGT TCCCTGAGGG GCTCGCTTGC GCAGTACCGT TCCCAGTCGC TGGAACGCTG GGCCCTCCGG GAGCAGGGCA CGGCCCAGGT GGGGTCGCCG AGGGATCAGC GCCTCGACAG CGTCTATCAG GAGGTCGTCG AGAGCAATCA GGCCATGATT GAGGCCTTGC ACAGCAAAAT ACGTTTTGAT CTGGCCCAAT TCTATTGGAC GCTTTTCGGT ATTCTGGTGT TTGTCACCGT TTTGGCTGTA TTGAGCTGGT ATTCTCTGCG CCGGTATATA GGCCAGCGCA ACCGGGCAAT TGCCTCTTTG AGCCGAAGTG AGGAGGATCT GCGCACGACC TTGATGTCCA TCGGCGACGG CGTGATCAGC ACGGACACGC AAGGGCGCGT TACCAGGATG AATGAGGTCG CCCAGCATTT GACCGCATGG GACGAGAAAG AAGCGCTGGG ACGGCCGTTG GAAGAGGTGT TCGCTATTGC CAACGCCCTT ACCGGCAAAG AGGTCGAAGC GCCGATCCAT CGGGTCCTGC GGGAGGGGAT GGTGGTCGGG TTGGCCAACC ATACGGTCCT CACAGCCCGC GACGGGACCC GGCGTCAGAT TGCGGACAGT GCTGCGCCCA TCCGCGTCTG TGACGGGGAA ATCACCGGAG TCGTCCTGGT CTTTCGTGAC GTCACTGAGC AATACGAGCA GGAACGACGG GTTCAGGAAA GCGAAACCCG CTTCCGGGCC CTCTTTGAAC TCATGGGCCA GGGAGTCGTC TTCCATGCAC CGGATGGCCG GATCGTTGAC GCCAACCCCG CCGCGCAGCG CATCCTGGGG CTGACCCTTG ACCAGTTGCA AGCCCGCCGT CCTTTCGATC CCAGTTGGAA GTGTGTGGAC AGTGACGGCC AAGATTTCCC GATGTCAGAG CATCCGGCCA TGGAGGTCCT ACGGACCGGT GAGGCTGTGG CCGGTGTGGT CATTGGAGTG TTTCACCCCG GCCGCCAGAA ATTTGTCTGG ATCCGCGTCA GCGCTGTGCC TCTTTTTTCC AGAGACAGTG GAAAACCCCT CGAGGTCTTC GCCTCCTTTG AGGACATCAC GGAGCTTAAA GAGGCCGAGG AGGCCCTGCG CTCCAGTGAG GCGGAGCTCC GGTATCTCTT TGACACCGCT CCGGTGGGTA TTTTCCGGAC CACCTCCACG GGCCGGGTCC TCAAGGTCAA TCCGAAGATG GCCGAGATCG TGGGCTGCGA CTCCCCGGAA CAGGCCTTGG AACGGTACCA GGATCTTTTT GTTGATCTCT ATGCCGATTC TGAGCGGCGG AGTGTTTTTC TTGACCGCTT ACAGCGCGAG GGCGAGATCC TGCAGTTCGA ATATGAAGGA TTTCGCCGCA ACGGCGCCCG GCGGTGGTTC ATGATGAACG CCCGTTTGAG CGGCTATCTC GAGGATGGGA GTTTTCTCAT CGACGGCTTC ACCTCAGACA TCACCGAGCG CCGGGAAGCC CAGGAGCGTA TCCAGCACCT CAACCTTGTC TTGCGGGCCA TCAGGGAAGT AAACCAGCTC ATCACTCGTG AGAAGGACGC CGAACAACTC CTGCGCAAGG CCAATCAACT CATGGTCGCC CACCGCGGCT ACAGCAGCGC TCTGGTCATC CGGACCGACG CCAACGGGAG GCCCCAGACC TATTACCATG CCGGTGAGGA TAATTCGCCG ATCTTCCAAC CGCTGGCAGA GCACATCGAG GCCGGCATGT TGCCGCCGTG TTGCCGGCTG CTAGATTCCA AGACCGAGGT CCTGTTCGTC CCCAAGGCCG AGGGCGCCTG CGCGGGGTGT CCCCAGGAAA ACACGTGCCA GACCTTTGAC ACCTTGTGCG TGGCCCTGCG CTATGCAGAC CGCTTTTTCG GTTACATTGC CGTGGCCCTG CCCCAGGGAC GTGGCTATGA TCCTGAAGAA CAGAATCTCT TTCAGGAAGC GGCCAACGAC GTCGCGTTTG CCCTGTATAC CATCGAACAG GAAGCCCAGG TCAAGCAGGC CACGGCTGAA CGGGAACGCA TGGAAGATCA ACTCCAACAG GCGCAGAAGA TGGAAGCGGT GGGACGGCTG GCAGGCGGGG TAGCCCACGA TTTCAACAAT ATGCTCAACG TCATCCTCGG GTATACCGAC ACCTCGTTAT TGCAGATGGA TCGTGGCCAT CCCCTGTATG AAGCCATGAC CCAGATCCAT CTGGCGGCAG AGCGCTCCGC AGACCTGACC CGTCAACTCC TGGCTTTTTC CCGCAAGCAG ATTACCCAAC CGCAGGTGTT GAACCTGAAT ACGCTTTTGG AGAATCAATC GAAGATGCTG GACCGCTTGA TCGGCGAGGA TGTCGAACTG CAGTTTGTTC CGGCCACGTC GTTGTGGAAT GTGCGCCTCG ATCCCTCCCA ACTCGATCAG ATTCTGGCCA ATCTCGTGGT CAACGCCCGG GACGCCATGC CCGAAGGCGG GACCATCACC ATAGAGACCG GCAATGTCGT GCTGGACGAG GCCTACTCCA GCCGCCTGCT CTCCGTGGAG GCCGGGGAAT ATGTGCTCCT GGCGGTCAGC GATAGCGGCA AGGGGCTGCC CCCGGAGATG CAGGAGCAGA TTTTCGAACC CTTTTTCACC ACCAAGAGTA AAGGGGAGGG GACCGGCCTC GGCTTGTCAA CGGTCTATGG TATCGTTCAG CAAAATCAGG GTTTTATTCA CTTGTATAGT GAGATGGAAT CGGGAACGAC CTTCAAGATC TATTTGCCGC GGGTCATCGA AGAGGCTGTG CAGCCGACCC AAGAGGAGGA TCACGGTCCT CTGACAGGCC GGGAAACGCT TCTGGTCGTC GAGGATGAGG AGCAATTACT GGAGTTGATC GGGTCCGTGC TCGAAGAATA CGGTTACACC GTGCTCGCCG CCGGAAGCCC GCAGCAGGCG ATGGACTTGG CTGCCAAGAC GAAGACGCCG ATCGAGCTTA TGCTGACCGA CGTGGTCATG CCGGGAATGA ACGGCAAGAT GCTGCGCGCC CGGATTCAGG CGGAGCACCC AGAGATCAAG ACGGTCTATA TGTCCGGCTA CACAGATAAT GTCATTGTCA AACAGGGCAT GGTCGAGCCT GGGCTCGCCT TTATCCAGAA ACCGTTTTCC ATGGAAGGAC TCGCCCGCAA GGTGCGCCGG GTACTCGACG CTGACGAATA A
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Protein sequence | MARESFLPNT PEKPVRLYAV LGLCVLGICI AIIVTWSTGR RMTVHHARLV HTATEIKFQV SQAHIWLEEG LLGDPTVERD TFMTHLDQAE ALAVAMLEGG MGAGEPLRPV QTAGLRREIR SLRGSLAQYR SQSLERWALR EQGTAQVGSP RDQRLDSVYQ EVVESNQAMI EALHSKIRFD LAQFYWTLFG ILVFVTVLAV LSWYSLRRYI GQRNRAIASL SRSEEDLRTT LMSIGDGVIS TDTQGRVTRM NEVAQHLTAW DEKEALGRPL EEVFAIANAL TGKEVEAPIH RVLREGMVVG LANHTVLTAR DGTRRQIADS AAPIRVCDGE ITGVVLVFRD VTEQYEQERR VQESETRFRA LFELMGQGVV FHAPDGRIVD ANPAAQRILG LTLDQLQARR PFDPSWKCVD SDGQDFPMSE HPAMEVLRTG EAVAGVVIGV FHPGRQKFVW IRVSAVPLFS RDSGKPLEVF ASFEDITELK EAEEALRSSE AELRYLFDTA PVGIFRTTST GRVLKVNPKM AEIVGCDSPE QALERYQDLF VDLYADSERR SVFLDRLQRE GEILQFEYEG FRRNGARRWF MMNARLSGYL EDGSFLIDGF TSDITERREA QERIQHLNLV LRAIREVNQL ITREKDAEQL LRKANQLMVA HRGYSSALVI RTDANGRPQT YYHAGEDNSP IFQPLAEHIE AGMLPPCCRL LDSKTEVLFV PKAEGACAGC PQENTCQTFD TLCVALRYAD RFFGYIAVAL PQGRGYDPEE QNLFQEAAND VAFALYTIEQ EAQVKQATAE RERMEDQLQQ AQKMEAVGRL AGGVAHDFNN MLNVILGYTD TSLLQMDRGH PLYEAMTQIH LAAERSADLT RQLLAFSRKQ ITQPQVLNLN TLLENQSKML DRLIGEDVEL QFVPATSLWN VRLDPSQLDQ ILANLVVNAR DAMPEGGTIT IETGNVVLDE AYSSRLLSVE AGEYVLLAVS DSGKGLPPEM QEQIFEPFFT TKSKGEGTGL GLSTVYGIVQ QNQGFIHLYS EMESGTTFKI YLPRVIEEAV QPTQEEDHGP LTGRETLLVV EDEEQLLELI GSVLEEYGYT VLAAGSPQQA MDLAAKTKTP IELMLTDVVM PGMNGKMLRA RIQAEHPEIK TVYMSGYTDN VIVKQGMVEP GLAFIQKPFS MEGLARKVRR VLDADE
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