Gene Dret_1648 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDret_1648 
Symbol 
ID8419479 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfohalobium retbaense DSM 5692 
KingdomBacteria 
Replicon accessionNC_013223 
Strand
Start bp1898304 
End bp1901834 
Gene Length3531 bp 
Protein Length1176 aa 
Translation table11 
GC content59% 
IMG OID645038222 
Productmulti-sensor hybrid histidine kinase 
Protein accessionYP_003198510 
Protein GI258405768 
COG category[T] Signal transduction mechanisms 
COG ID[COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system 
TIGRFAM ID[TIGR00229] PAS domain S-box 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.883005 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones27 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCCCGTG AATCGTTTTT GCCGAATACA CCTGAGAAAC CGGTTCGATT GTATGCCGTT 
CTCGGGCTGT GCGTGTTGGG CATTTGTATC GCTATTATTG TTACCTGGTC CACCGGCCGG
CGGATGACGG TCCATCACGC CCGGCTGGTG CACACGGCTA CGGAGATCAA GTTTCAAGTC
TCTCAGGCCC ATATCTGGCT GGAAGAGGGA CTTCTCGGTG ACCCGACGGT AGAGCGGGAC
ACGTTTATGA CCCATCTGGA CCAGGCCGAG GCCCTGGCGG TAGCCATGCT CGAAGGGGGA
ATGGGGGCCG GGGAGCCGTT GCGCCCGGTC CAGACTGCCG GACTCCGCCG GGAGATCCGT
TCCCTGAGGG GCTCGCTTGC GCAGTACCGT TCCCAGTCGC TGGAACGCTG GGCCCTCCGG
GAGCAGGGCA CGGCCCAGGT GGGGTCGCCG AGGGATCAGC GCCTCGACAG CGTCTATCAG
GAGGTCGTCG AGAGCAATCA GGCCATGATT GAGGCCTTGC ACAGCAAAAT ACGTTTTGAT
CTGGCCCAAT TCTATTGGAC GCTTTTCGGT ATTCTGGTGT TTGTCACCGT TTTGGCTGTA
TTGAGCTGGT ATTCTCTGCG CCGGTATATA GGCCAGCGCA ACCGGGCAAT TGCCTCTTTG
AGCCGAAGTG AGGAGGATCT GCGCACGACC TTGATGTCCA TCGGCGACGG CGTGATCAGC
ACGGACACGC AAGGGCGCGT TACCAGGATG AATGAGGTCG CCCAGCATTT GACCGCATGG
GACGAGAAAG AAGCGCTGGG ACGGCCGTTG GAAGAGGTGT TCGCTATTGC CAACGCCCTT
ACCGGCAAAG AGGTCGAAGC GCCGATCCAT CGGGTCCTGC GGGAGGGGAT GGTGGTCGGG
TTGGCCAACC ATACGGTCCT CACAGCCCGC GACGGGACCC GGCGTCAGAT TGCGGACAGT
GCTGCGCCCA TCCGCGTCTG TGACGGGGAA ATCACCGGAG TCGTCCTGGT CTTTCGTGAC
GTCACTGAGC AATACGAGCA GGAACGACGG GTTCAGGAAA GCGAAACCCG CTTCCGGGCC
CTCTTTGAAC TCATGGGCCA GGGAGTCGTC TTCCATGCAC CGGATGGCCG GATCGTTGAC
GCCAACCCCG CCGCGCAGCG CATCCTGGGG CTGACCCTTG ACCAGTTGCA AGCCCGCCGT
CCTTTCGATC CCAGTTGGAA GTGTGTGGAC AGTGACGGCC AAGATTTCCC GATGTCAGAG
CATCCGGCCA TGGAGGTCCT ACGGACCGGT GAGGCTGTGG CCGGTGTGGT CATTGGAGTG
TTTCACCCCG GCCGCCAGAA ATTTGTCTGG ATCCGCGTCA GCGCTGTGCC TCTTTTTTCC
AGAGACAGTG GAAAACCCCT CGAGGTCTTC GCCTCCTTTG AGGACATCAC GGAGCTTAAA
GAGGCCGAGG AGGCCCTGCG CTCCAGTGAG GCGGAGCTCC GGTATCTCTT TGACACCGCT
CCGGTGGGTA TTTTCCGGAC CACCTCCACG GGCCGGGTCC TCAAGGTCAA TCCGAAGATG
GCCGAGATCG TGGGCTGCGA CTCCCCGGAA CAGGCCTTGG AACGGTACCA GGATCTTTTT
GTTGATCTCT ATGCCGATTC TGAGCGGCGG AGTGTTTTTC TTGACCGCTT ACAGCGCGAG
GGCGAGATCC TGCAGTTCGA ATATGAAGGA TTTCGCCGCA ACGGCGCCCG GCGGTGGTTC
ATGATGAACG CCCGTTTGAG CGGCTATCTC GAGGATGGGA GTTTTCTCAT CGACGGCTTC
ACCTCAGACA TCACCGAGCG CCGGGAAGCC CAGGAGCGTA TCCAGCACCT CAACCTTGTC
TTGCGGGCCA TCAGGGAAGT AAACCAGCTC ATCACTCGTG AGAAGGACGC CGAACAACTC
CTGCGCAAGG CCAATCAACT CATGGTCGCC CACCGCGGCT ACAGCAGCGC TCTGGTCATC
CGGACCGACG CCAACGGGAG GCCCCAGACC TATTACCATG CCGGTGAGGA TAATTCGCCG
ATCTTCCAAC CGCTGGCAGA GCACATCGAG GCCGGCATGT TGCCGCCGTG TTGCCGGCTG
CTAGATTCCA AGACCGAGGT CCTGTTCGTC CCCAAGGCCG AGGGCGCCTG CGCGGGGTGT
CCCCAGGAAA ACACGTGCCA GACCTTTGAC ACCTTGTGCG TGGCCCTGCG CTATGCAGAC
CGCTTTTTCG GTTACATTGC CGTGGCCCTG CCCCAGGGAC GTGGCTATGA TCCTGAAGAA
CAGAATCTCT TTCAGGAAGC GGCCAACGAC GTCGCGTTTG CCCTGTATAC CATCGAACAG
GAAGCCCAGG TCAAGCAGGC CACGGCTGAA CGGGAACGCA TGGAAGATCA ACTCCAACAG
GCGCAGAAGA TGGAAGCGGT GGGACGGCTG GCAGGCGGGG TAGCCCACGA TTTCAACAAT
ATGCTCAACG TCATCCTCGG GTATACCGAC ACCTCGTTAT TGCAGATGGA TCGTGGCCAT
CCCCTGTATG AAGCCATGAC CCAGATCCAT CTGGCGGCAG AGCGCTCCGC AGACCTGACC
CGTCAACTCC TGGCTTTTTC CCGCAAGCAG ATTACCCAAC CGCAGGTGTT GAACCTGAAT
ACGCTTTTGG AGAATCAATC GAAGATGCTG GACCGCTTGA TCGGCGAGGA TGTCGAACTG
CAGTTTGTTC CGGCCACGTC GTTGTGGAAT GTGCGCCTCG ATCCCTCCCA ACTCGATCAG
ATTCTGGCCA ATCTCGTGGT CAACGCCCGG GACGCCATGC CCGAAGGCGG GACCATCACC
ATAGAGACCG GCAATGTCGT GCTGGACGAG GCCTACTCCA GCCGCCTGCT CTCCGTGGAG
GCCGGGGAAT ATGTGCTCCT GGCGGTCAGC GATAGCGGCA AGGGGCTGCC CCCGGAGATG
CAGGAGCAGA TTTTCGAACC CTTTTTCACC ACCAAGAGTA AAGGGGAGGG GACCGGCCTC
GGCTTGTCAA CGGTCTATGG TATCGTTCAG CAAAATCAGG GTTTTATTCA CTTGTATAGT
GAGATGGAAT CGGGAACGAC CTTCAAGATC TATTTGCCGC GGGTCATCGA AGAGGCTGTG
CAGCCGACCC AAGAGGAGGA TCACGGTCCT CTGACAGGCC GGGAAACGCT TCTGGTCGTC
GAGGATGAGG AGCAATTACT GGAGTTGATC GGGTCCGTGC TCGAAGAATA CGGTTACACC
GTGCTCGCCG CCGGAAGCCC GCAGCAGGCG ATGGACTTGG CTGCCAAGAC GAAGACGCCG
ATCGAGCTTA TGCTGACCGA CGTGGTCATG CCGGGAATGA ACGGCAAGAT GCTGCGCGCC
CGGATTCAGG CGGAGCACCC AGAGATCAAG ACGGTCTATA TGTCCGGCTA CACAGATAAT
GTCATTGTCA AACAGGGCAT GGTCGAGCCT GGGCTCGCCT TTATCCAGAA ACCGTTTTCC
ATGGAAGGAC TCGCCCGCAA GGTGCGCCGG GTACTCGACG CTGACGAATA A
 
Protein sequence
MARESFLPNT PEKPVRLYAV LGLCVLGICI AIIVTWSTGR RMTVHHARLV HTATEIKFQV 
SQAHIWLEEG LLGDPTVERD TFMTHLDQAE ALAVAMLEGG MGAGEPLRPV QTAGLRREIR
SLRGSLAQYR SQSLERWALR EQGTAQVGSP RDQRLDSVYQ EVVESNQAMI EALHSKIRFD
LAQFYWTLFG ILVFVTVLAV LSWYSLRRYI GQRNRAIASL SRSEEDLRTT LMSIGDGVIS
TDTQGRVTRM NEVAQHLTAW DEKEALGRPL EEVFAIANAL TGKEVEAPIH RVLREGMVVG
LANHTVLTAR DGTRRQIADS AAPIRVCDGE ITGVVLVFRD VTEQYEQERR VQESETRFRA
LFELMGQGVV FHAPDGRIVD ANPAAQRILG LTLDQLQARR PFDPSWKCVD SDGQDFPMSE
HPAMEVLRTG EAVAGVVIGV FHPGRQKFVW IRVSAVPLFS RDSGKPLEVF ASFEDITELK
EAEEALRSSE AELRYLFDTA PVGIFRTTST GRVLKVNPKM AEIVGCDSPE QALERYQDLF
VDLYADSERR SVFLDRLQRE GEILQFEYEG FRRNGARRWF MMNARLSGYL EDGSFLIDGF
TSDITERREA QERIQHLNLV LRAIREVNQL ITREKDAEQL LRKANQLMVA HRGYSSALVI
RTDANGRPQT YYHAGEDNSP IFQPLAEHIE AGMLPPCCRL LDSKTEVLFV PKAEGACAGC
PQENTCQTFD TLCVALRYAD RFFGYIAVAL PQGRGYDPEE QNLFQEAAND VAFALYTIEQ
EAQVKQATAE RERMEDQLQQ AQKMEAVGRL AGGVAHDFNN MLNVILGYTD TSLLQMDRGH
PLYEAMTQIH LAAERSADLT RQLLAFSRKQ ITQPQVLNLN TLLENQSKML DRLIGEDVEL
QFVPATSLWN VRLDPSQLDQ ILANLVVNAR DAMPEGGTIT IETGNVVLDE AYSSRLLSVE
AGEYVLLAVS DSGKGLPPEM QEQIFEPFFT TKSKGEGTGL GLSTVYGIVQ QNQGFIHLYS
EMESGTTFKI YLPRVIEEAV QPTQEEDHGP LTGRETLLVV EDEEQLLELI GSVLEEYGYT
VLAAGSPQQA MDLAAKTKTP IELMLTDVVM PGMNGKMLRA RIQAEHPEIK TVYMSGYTDN
VIVKQGMVEP GLAFIQKPFS MEGLARKVRR VLDADE