Gene Dret_1606 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDret_1606 
Symbol 
ID8419436 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfohalobium retbaense DSM 5692 
KingdomBacteria 
Replicon accessionNC_013223 
Strand
Start bp1852812 
End bp1853627 
Gene Length816 bp 
Protein Length271 aa 
Translation table11 
GC content64% 
IMG OID645038179 
Product2-dehydro-3-deoxyphosphooctonate aldolase 
Protein accessionYP_003198468 
Protein GI258405726 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG2877] 3-deoxy-D-manno-octulosonic acid (KDO) 8-phosphate synthase 
TIGRFAM ID[TIGR01362] 3-deoxy-8-phosphooctulonate synthase 


Plasmid Coverage information

Num covering plasmid clones29 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones22 
Fosmid unclonability p-value0.800186 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGACTGGAG CAAGCGATCT TTTCTCTTTG TCCCGGCGCT CTTTGTTTGC CATTGTCGGG 
CCATGTGCTC TGGAAGAGCT GGAACTCGGC CTGCGGGTAG CCGAACGGCT GGCCGCCATT
CAGGACGAGT TGGGCATCCC TCTGGTATTC AAGAGCTCGT TCGACAAGGC CAACCGGAGT
TCCGTGGACA GTTTTCGCGG TCCCGGTCTG CAGACCGGCC TCGAATGGCT GCAGCGGATC
AAAGAGGCTT CCGGTCTGCC GGTGGTCACG GACATCCATG CCCCGGAACA GGCCCGTCCC
GTGGCCGATG TGGCCGATGT CCTCCAGATT CCGGCGTTTT TATGCCGCCA GACCGACCTG
CTTCTGGCCG CGGCCAAGAC CGGGCGGATC GTGAACGTCA AGAAGGGGCA GTTTCTGGCG
CCGTGGGATA TGGCCAATGT TGTGGCCAAG CTCGAAGCCG GTGGGGGGGA ATCCATCTGG
CTGACCGAGC GGGGCAGTTC GTTCGGCTAC AACAACCTCG TGGTCGACAT GCGTTCGATC
CCGATCATGC AGGACACCGG CTGGCCGGCG GTCTTCGACG CCACCCATTC GGTGCAATTG
CCCGGCGGAC AGGGAACGCG TTCCGGCGGG CAGCGGCAAT TTGTCGGGAC CTTGGCCCGG
GCTGCCGTGG CGGCCGGCTG CAACGGTATT TTTCTCGAAG TCCATCCCGA CCCGGACCAC
GCCCTGTGCG ACGGGCCGAA CAGTTTGGCC CTTGACGCGC TGGCCGGAGA ACTCCGCCGC
CTCCTGGCGG TACGGGAGGC TGTGCATGGA AACTAG
 
Protein sequence
MTGASDLFSL SRRSLFAIVG PCALEELELG LRVAERLAAI QDELGIPLVF KSSFDKANRS 
SVDSFRGPGL QTGLEWLQRI KEASGLPVVT DIHAPEQARP VADVADVLQI PAFLCRQTDL
LLAAAKTGRI VNVKKGQFLA PWDMANVVAK LEAGGGESIW LTERGSSFGY NNLVVDMRSI
PIMQDTGWPA VFDATHSVQL PGGQGTRSGG QRQFVGTLAR AAVAAGCNGI FLEVHPDPDH
ALCDGPNSLA LDALAGELRR LLAVREAVHG N