Gene Dret_1603 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDret_1603 
Symbol 
ID8419433 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfohalobium retbaense DSM 5692 
KingdomBacteria 
Replicon accessionNC_013223 
Strand
Start bp1851202 
End bp1851747 
Gene Length546 bp 
Protein Length181 aa 
Translation table11 
GC content61% 
IMG OID645038176 
ProductOstA family protein 
Protein accessionYP_003198465 
Protein GI258405723 
COG category[S] Function unknown 
COG ID[COG1934] Uncharacterized protein conserved in bacteria 
TIGRFAM ID[TIGR03002] lipopolysaccharide transport periplasmic protein LptA 


Plasmid Coverage information

Num covering plasmid clones27 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones23 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGAAGAC GACTATTGTT CCTTGGTATG CTGGCGGCGG TGCTGAGCAT GGCCTCTCCC 
CTGGGAGCCC AGCAGGGCGA GCAAACCGCG CCCATCAAAA TCACCTCGGA TACCATGCGC
TACGCCCACG CCGACAAACA GGTCCGTTTC AAGGGGTCTG TGCATGCGAT TCGGGATACT
TTTGAGTTGT GGTCCGAGAC CTTGACCGTG TTTCTCAAGG CCGGGGCGGC AGACACCGCT
GAAGGCGGCA TGGGCATGGG CGGTGACCAG AGCATCGACC ACCTCGTGGC CGAGGGCGAT
GTCCGGCTGC AGGAGGGCAA CCGGACCGGC TATTGCGACA CGGCCTGGTT CTATCCCGAC
GAGGGGATGC TGCGTCTCGA AGGATCGCCG CGCCTGGAAC AGGGAGAAAA CAGCATCAGC
GGCAGTGTGA TCAAGATGTA TCTCAAGGAG AACAGGAGCG AAGTCATCGG CGGCGACTCC
GGGCGTGTCG AGGCCCTGTT CTATTCCCCT GAGGAAGGCT TCGGCGATGC AGACAGCGGA
AATTGA
 
Protein sequence
MRRRLLFLGM LAAVLSMASP LGAQQGEQTA PIKITSDTMR YAHADKQVRF KGSVHAIRDT 
FELWSETLTV FLKAGAADTA EGGMGMGGDQ SIDHLVAEGD VRLQEGNRTG YCDTAWFYPD
EGMLRLEGSP RLEQGENSIS GSVIKMYLKE NRSEVIGGDS GRVEALFYSP EEGFGDADSG
N