| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dret_1588 |
|---|
| Symbol | |
|---|
| ID | 8419418 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfohalobium retbaense DSM 5692 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013223 |
|---|
| Strand | - |
|---|
| Start bp | 1838374 |
|---|
| End bp | 1839105 |
|---|
| Gene Length | 732 bp |
|---|
| Protein Length | 243 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 645038161 |
|---|
| Product | MotA/TolQ/ExbB proton channel |
|---|
| Protein accession | YP_003198450 |
|---|
| Protein GI | 258405708 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG0811] Biopolymer transport proteins |
|---|
| TIGRFAM ID | [TIGR02796] TolQ protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.16518 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGATATCG CGACACATTC CGGGTTTTGG GGCATGATCC AAGAGGCCAC CATTGTGGTC
CAATTCGTCC TGGCCCTGCT GGCAGCCATG TCTGTTACCA GTTGGGCCAT TATTCTGTAC
AAGATTTTCC AATTGACCCA GGCCAAACGG AAAGTGCGTC AAGAAGCCGA ACAATTCGCC
AACGCCCGTG ATCTGGCCAC AGCCATGCAG CAACTCAAGC GCAACCAGAA TTCGGCCCTG
TATTTGGTTG GTTACGAGGC GATCAGCGAA CTGCACCGCC TGGAGCGCTC TTCTCTCCAG
TCCCGGCAGA AAGCGGCGGT GGCCGCGGAC AATATCCGCC GGGTGCTGCG CCGCGGCGTG
AGCAAGCGGA TGACCCAATA CGCCCAGAAC CTCGCCTTTT TGGCGACCTG CGGCAATGCG
GCTCCGTTTA TCGGACTGTT CGGGACGGTC TGGGGGATCA TGCACGCCTT TCAGACCATC
GGCCTGGAAC AGACCGCAGC TCTGGCGGCG GTGGCCCCCG GGATATCCGA AGCCCTGGTG
GCCACAGCCA TCGGTCTGGC CGTGGCCATT CCAGCGACCA TCGCCTACAA CTCCTTTCTC
GGAGTCCTCA ATGCGGTGGA AGCGGAAATG GTCAATTTCG CCGGTTCGTT TCTCAACCGG
GCCCAGCGTG AGGTCTCCTG GCTGAGCCGC CGGGATATCC GTTCGTCTGA CGCTGAACAT
ACCGAGTTGT GA
|
|---|
| Protein sequence | MDIATHSGFW GMIQEATIVV QFVLALLAAM SVTSWAIILY KIFQLTQAKR KVRQEAEQFA
NARDLATAMQ QLKRNQNSAL YLVGYEAISE LHRLERSSLQ SRQKAAVAAD NIRRVLRRGV
SKRMTQYAQN LAFLATCGNA APFIGLFGTV WGIMHAFQTI GLEQTAALAA VAPGISEALV
ATAIGLAVAI PATIAYNSFL GVLNAVEAEM VNFAGSFLNR AQREVSWLSR RDIRSSDAEH
TEL
|
|---|
| |