| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dret_1497 |
|---|
| Symbol | |
|---|
| ID | 8419326 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfohalobium retbaense DSM 5692 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013223 |
|---|
| Strand | - |
|---|
| Start bp | 1734780 |
|---|
| End bp | 1736312 |
|---|
| Gene Length | 1533 bp |
|---|
| Protein Length | 510 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 645038071 |
|---|
| Product | diguanylate cyclase |
|---|
| Protein accession | YP_003198361 |
|---|
| Protein GI | 258405619 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2199] FOG: GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.00000624142 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 4 |
|---|
| Fosmid unclonability p-value | 0.000000668265 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAAAGAAT CAATAAAATA TTTGATGTTC AAATATAAAT ATATCTTTGT GGCCGTGTTG
TTCGGGGTGA TGCTCTTTTT TTATTGGCAT ACATACCAAG ATGTTGTCGA TCTGATCCGG
TCGTCTCACC GTACAGAACG CAGTATGGTT GAAGAGAATG TCTTCGATGA ATTGCGCCAT
GTTGATACGA GTTATAAGAT ACTTGAAAAA TATCTCAATG AAGATATGCG AGAAATATCT
TTGCAAATGA GAAATTACTA TACAAGGCAT GGCGGTATAG AAAGCATTGA CTTGGCATAT
TGGAAAAAGA AGTATCCAGA CTATGATTTT TATGTCATCA ATGAAGAGCT AGAGGTGGTC
GATGCAACTT TGGGTCATGA CATAGGTCTT AATTTTAGCA AATTTCCTAG CTTTTCAAGA
TTGTTGAAGC GGCGTATGCA GGGTGATGCG TTTGTCGCCG ATCGCATGGA TGCTTCGGTC
AAGACGGGAA AGATTAAAAA GTATAGCTAT ATACCTACTC CTGACCATAA GTATTTGTTA
GAGCTTAGTA TTGATATCCA GCAGGCCAAT CCGGTCGCCA AGAAACTGGA TTTATATTCG
TATGCCAAGT CGTTGATCCA TAAGCATGCC ATTGTTGATG CTATTCAAAT TTTCAAGATC
AACGAACAAG GGACCAATTC GGGGTTGGTG ACTATTGGCA AAGGAACGTC GTTGGATACG
GATATTGCTC CGGAGGTGAA ACAAACTATT GAGCGTGTCG TGCAGTCCCG GCAGCCTAAG
ACAATTACAG CAGCTCCACG CAACAAAGTC TACAAATATA GGCCCTACCT TTCTGATACG
GAGGGGGGCG AACTGGATTG GTGGAATTCG TATGTCATCC GGCTGACCTA TAATACCGCT
CCGCTGAAGA GTGAGTTGGC GCAGCAAAGG AGTCTGTTCG GGGTTAAAAT TGCTCTTCTC
GCTTTTGCCT TTCTCCTTTT TCAGGCGACG ATGATGTACC TCTTCCGCCA TACCGAGCAT
GTGGCTTCGG TTGATCCCTT GACCCAATTG CCGAATGTCA AGCATTTTAA AATGCAATTT
CGCAAGGCGA CATTGCGCCA GGCCGTCAGG AGCGAGACAG AAAAAGCAGT TGTCTTGTTC
GTAGATCTCG ACAATTTTAA AGAGATCAAC GACACCTATG GGCATGAAAC TGGGGATATT
GTCCTGCAGA ATGTGGCTTC GGTGTTGCGA TCGACGTTGC GGAAGGACGA TACAGTCGTG
CGAATCGGAG GAGACGAATT CCTGGTCCTG CTTCCAGACA TGGCCTCGGA CGCGGATATC
AGCACTGTGG TTGCGAAAAT AAGCCGGGCC CTGCAGTTTT TCCTCCCGGT TAATGGCCAG
TCTATCGCCA TTCAGGCCAG TATCGGCGTC AGCCTTTATC CGGACAGCGG TCACGCCCTG
GACGATTTAA TCCGCAAAGC AGATACGGCC ATGTACCGGG CCAAGAACGC TGCCCACGCC
GACAGCAATT GGGTGGTCTA TTCGGAGGGG TAA
|
|---|
| Protein sequence | MKESIKYLMF KYKYIFVAVL FGVMLFFYWH TYQDVVDLIR SSHRTERSMV EENVFDELRH
VDTSYKILEK YLNEDMREIS LQMRNYYTRH GGIESIDLAY WKKKYPDYDF YVINEELEVV
DATLGHDIGL NFSKFPSFSR LLKRRMQGDA FVADRMDASV KTGKIKKYSY IPTPDHKYLL
ELSIDIQQAN PVAKKLDLYS YAKSLIHKHA IVDAIQIFKI NEQGTNSGLV TIGKGTSLDT
DIAPEVKQTI ERVVQSRQPK TITAAPRNKV YKYRPYLSDT EGGELDWWNS YVIRLTYNTA
PLKSELAQQR SLFGVKIALL AFAFLLFQAT MMYLFRHTEH VASVDPLTQL PNVKHFKMQF
RKATLRQAVR SETEKAVVLF VDLDNFKEIN DTYGHETGDI VLQNVASVLR STLRKDDTVV
RIGGDEFLVL LPDMASDADI STVVAKISRA LQFFLPVNGQ SIAIQASIGV SLYPDSGHAL
DDLIRKADTA MYRAKNAAHA DSNWVVYSEG
|
|---|
| |