| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dret_1486 |
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| Symbol | |
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| ID | 8419315 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfohalobium retbaense DSM 5692 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013223 |
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| Strand | - |
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| Start bp | 1716686 |
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| End bp | 1718263 |
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| Gene Length | 1578 bp |
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| Protein Length | 525 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 645038060 |
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| Product | PAS modulated sigma54 specific transcriptional regulator, Fis family |
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| Protein accession | YP_003198350 |
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| Protein GI | 258405608 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.0842644 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 2 |
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| Fosmid unclonability p-value | 0.0000000147012 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGATCAAAC TCCAGCTCAT TTTCCGTGAT CGGGTGGGCA TTATCGCCGA CATCACCGCC
ATGCTCGGTG AGGATTCGAT CAATATCCTG TCCATGGAAG TCGACGCCAG CGGTGATCGG
ACCTTCGTCT ATTTCGAAAC CCAGGCCGAA GACCTGTGCT CCTCTGATGA TCTCATGCGG
CGATTGAAAG AGATTCCGGG CCTGCTCGAG ATTTCGACCA TCCGGACCAT GCCCCAGGAA
AAACGGGAGC GGAGCCTGGA GGTCATCCTC AACAGTGTCA GCGACGGGAT TGTGGCCATC
GACGAGCACC GGCGGATCAT CGTCGCCAAC CGGGTGGCCC GGAATATTTT CGGGTGCAAG
GACCCGGAGA TTATCGGCAG GCCGATCCAG GCGCTGAATC TGCCGGATTT GTCCATGCTC
GAATGTTTGC GGGGCAAGCG GTACCATAAT GTCCCGCGCA AATGTCAGAC CCCGGCCGGC
CTGTTCCATT TTTTTGCCTC GGCCCAGCCG TTCAAGGATT CCAACGGCCG GATCGTCGGG
GCTGTGGAAG TCATGAAGGA CATGAAGGAA ATCAAACAAC TGGCCAATTT TGTCGCTGAC
CCGGCCCGGA TCACCTTCGA AGATATTATC GGCAAAAGTC CGGCCATCAC GTCGGCCATC
GCCTTTGCCA AGCAGGTTGC CCGCTCGAAC GCGGTCATCA GCATCCGCGG GGAAAGCGGG
ACCGGCAAAG AACTCTTTGC CCAGGCCATC CACCACGCCT CGGGCCTAAG CGGGCTTTTT
CTGCCCATCA ACTGCGCGAC CCTGCCGGAA CAGCTCCTGG AGAGCGAATT GTTCGGATAT
GAGGGGGGGA GTTTCACTGG AGCGGACAAA CAGGGGAAGG TGGGGCTGTT TGAAAAGGCC
AAGGACGGTA CGATTTTTCT CGACGAGATC GCCGAGATGC CCCCGAACTG CCAGGCCAAG
CTGTTGCGCG TCATCCAGGA GCGGCGGGTG CGCCGTATCG GCGGCAGCGC CGAAATCCCC
ATCAACGCCC GTATTGTGAC CGCCACGAGC AAGAATCTTG AAAGCATGGT CCGGGACAAC
CTCTTCCGCG ACGATCTCTA CTACCGGATC AACGTCCTGC CCATCTATCT GCCGGCGTTG
CGGGAACGCT TGGAAGACAT TCCGCTTCTG GCCGAGCATT TTCTCTTTCA ACTCAACTAC
AAGTTGAACA AGGGCCACCA ATTGCTGACC AAAGGGGCGC TGGAAAAACT CAGCGGACAC
GCCTGGCCCG GCAATATTCG CGAACTGCGC AATGTGATCG AGCGTGCGGC CATTCTCGGC
GGGGCCAATC AGATCAGCCA GGAGTGCATC CTGTTCAGCT TCGAGGTCGG CCAGCGCCAG
GAGGACCCCG GGGGGGTGTA TCCCAGTTGC TCCGTGGAAG GGCTGCGTGA TCAGCTTGAC
TCCCTGGAGC GCAAACTCCT GCAGCAGGCC CTGGACCGTA CGGCCAGCAT CCGTCAGGCC
GCGCGGCAGC TCAGGATTTC CCATTCGGCG CTTTTGAACA AGATGCGCAA ACACAAACTC
GGACTGGTTC AGAAATAA
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| Protein sequence | MIKLQLIFRD RVGIIADITA MLGEDSINIL SMEVDASGDR TFVYFETQAE DLCSSDDLMR
RLKEIPGLLE ISTIRTMPQE KRERSLEVIL NSVSDGIVAI DEHRRIIVAN RVARNIFGCK
DPEIIGRPIQ ALNLPDLSML ECLRGKRYHN VPRKCQTPAG LFHFFASAQP FKDSNGRIVG
AVEVMKDMKE IKQLANFVAD PARITFEDII GKSPAITSAI AFAKQVARSN AVISIRGESG
TGKELFAQAI HHASGLSGLF LPINCATLPE QLLESELFGY EGGSFTGADK QGKVGLFEKA
KDGTIFLDEI AEMPPNCQAK LLRVIQERRV RRIGGSAEIP INARIVTATS KNLESMVRDN
LFRDDLYYRI NVLPIYLPAL RERLEDIPLL AEHFLFQLNY KLNKGHQLLT KGALEKLSGH
AWPGNIRELR NVIERAAILG GANQISQECI LFSFEVGQRQ EDPGGVYPSC SVEGLRDQLD
SLERKLLQQA LDRTASIRQA ARQLRISHSA LLNKMRKHKL GLVQK
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