| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dret_1440 |
|---|
| Symbol | |
|---|
| ID | 8419269 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfohalobium retbaense DSM 5692 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013223 |
|---|
| Strand | + |
|---|
| Start bp | 1672227 |
|---|
| End bp | 1673174 |
|---|
| Gene Length | 948 bp |
|---|
| Protein Length | 315 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 645038015 |
|---|
| Product | diguanylate cyclase with PAS/PAC sensor |
|---|
| Protein accession | YP_003198305 |
|---|
| Protein GI | 258405563 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2199] FOG: GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.0301186 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 0.059237 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCGGCCA ACACCTCTTT TGACCAAACC CAGATCTTCG ACATCCTCAA TCAGGGTATC
GTTGTGCTCG ATCGCGAGCT CTGCATCGTC TTCTGGAATG CCTGGATGGA GGAGCACAGC
CGGTTGACGC GCGCCGAAGT CTTCGGCCGT CCGATCCGTG ATTTCTTTCC CGAACTGGAT
TCCAAAGCCT TTTTCTGGAA GGTCAACAGC GTCTTCAAGC TCGGCCATTT CAGTTTCTTC
GCCCAAAATG TCCACAGCTA TATTTTCCCC TTCAAATCCG AGAAATACCT CGACACCAAC
CACGACTACA TGCAACAGAG CGTGAGTCTG GCCCCATTGC GCGACGATCA AGGCCGGGTC
TCGCATGTCT GTGTCCAAGT GGCCGACGAA ACTGACACTG TCCTGGCCCG GGAGCGCATG
GAAGAAGCCA GGTGCCAGCT CGAAGAAATG ACCCGCCTCG ATCCGCTGAC CGGCCTGGCC
AACCGGCGTC ACCTCATGGA AAGCCTGTCC CGGGAACTCT CGCGCTGCGG ACGCAGCGGC
TCCCAGGTCA CGGTAGCCAT CCTGGATCTG GACCACTTCA AAGTGGTCAA CGACACCTAT
GGCCACCTCT GCGGCGACCA AGTCCTGATC CACACCGCAA AGCGCCTGGA ATCGATGCTC
CGCCAGTATG ACCTTGTCGG TCGGTATGGC GGAGAGGAAT TCTGCGTTAT TCTTCCAGAG
ACCTCCCTGA AGTCCGGTTT CGAGATCGTC GAGCGTTTGC GCAAAGCGGT GGCCGCGACT
CCGGTCCCCT ATGAGGACCT CGAGATACCG CTCACTGTCA GCGCCGGATG CGCCTGCACC
GAAGACATGG AGTGCCTGTC TACCGACGCC CTATTGTTGT CTGCGGACCA ATATCTTTAC
AAAGCCAAGG ATGCCGGTCG AGACTGCGTC CAATGCTCCC TTAGCTGA
|
|---|
| Protein sequence | MPANTSFDQT QIFDILNQGI VVLDRELCIV FWNAWMEEHS RLTRAEVFGR PIRDFFPELD
SKAFFWKVNS VFKLGHFSFF AQNVHSYIFP FKSEKYLDTN HDYMQQSVSL APLRDDQGRV
SHVCVQVADE TDTVLARERM EEARCQLEEM TRLDPLTGLA NRRHLMESLS RELSRCGRSG
SQVTVAILDL DHFKVVNDTY GHLCGDQVLI HTAKRLESML RQYDLVGRYG GEEFCVILPE
TSLKSGFEIV ERLRKAVAAT PVPYEDLEIP LTVSAGCACT EDMECLSTDA LLLSADQYLY
KAKDAGRDCV QCSLS
|
|---|
| |