Gene Dret_1414 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDret_1414 
Symbol 
ID8419243 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfohalobium retbaense DSM 5692 
KingdomBacteria 
Replicon accessionNC_013223 
Strand
Start bp1645047 
End bp1646048 
Gene Length1002 bp 
Protein Length333 aa 
Translation table11 
GC content61% 
IMG OID645037989 
Product3-oxoacyl-(acyl-carrier-protein) synthase III 
Protein accessionYP_003198279 
Protein GI258405537 
COG category[I] Lipid transport and metabolism 
COG ID[COG0332] 3-oxoacyl-[acyl-carrier-protein] synthase III 
TIGRFAM ID[TIGR00747] 3-oxoacyl-(acyl-carrier-protein) synthase III 


Plasmid Coverage information

Num covering plasmid clones26 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones22 
Fosmid unclonability p-value0.662472 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCCGCTC ACACTCCGAA AATTCTCGGC TTCGGTCATT ACGCTCCTTC CAGAACGCTC 
ACCAATGCCG ACCTCGAAAA GATGGTCGAC ACCTCGGACG ACTGGATCAC CACCCGAACC
GGGATTAAAG AACGCCACGT CGCCGCCCCG GACGAAGCCT GCTCCGATCT GGCCCTTCCC
GCCGCCCGGC AGGCCTTGGA ACAGGCTGGC CTGACTCCCG ATTCCCTGAC CCATATTTTT
GTCGCCACGT TTACTCCGGA CGCCTACGTG CCCAGCGCCG CCTGCGTTTT GCAGCACAAG
CTCGGAGCCT CGCAGGCCAT GGCCATGGAT TTGGCCGCGG CCTGTTCGGG ATTTCTCTAT
TCCCTGGAAA CAGCCCGGGC CTTCCTGGCC ATCCACCCGG AAGCCAAGAT CCTGGTCGTG
GGCAGTGAAG TCATCACCTC CCGGACCAAT TTCACCGATC GCTCGACCTG CGTCCTGTTC
GGCGATGCGG CCGGGGCGGC TGTTCTCGGC AACCAGGACA ATGCAATAGC CGCATTGGAT
GATGTCCTTT TGGGTGCAGA CGGCAGCCTC GGTGATCTGC TGGTCGTCCG CGGCGGTGGT
TCTGGGGCCC CTGTCGCCCT TGGGGAGAGC GTGGACGAAT CCTTTTTTGT CCAGATGCAA
GGCAGTGAGG TCTTCCGCCA CGCCGTGCGC AGCATGGCCT CCATCACCAA CCAGGTCCTG
GCCCGCGCCG GTCTTTCGGC CAAGGATATC GACCTCTTCA TCCCCCACCA AGCCAATATC
CGAATTATCG AAGCCCTGGC CAAGAAGCTC GCCTTCCCCA TCGACAAGGT CTACGTCAAC
GTGAACCGCT TCGGAAACTC CTCCGCGGCT TCAGTTCCGC TGGCCTTAAG CGAAGCGTTG
CAAGAAGGCT ATATCCCTGA AGATGCCACG GTGTTGCTGG CGTCGTTTGG TGGCGGATTC
ACCTGGGGAG CAGCCTTGCT CAAATTTGGC CGGGGGCATT GA
 
Protein sequence
MSAHTPKILG FGHYAPSRTL TNADLEKMVD TSDDWITTRT GIKERHVAAP DEACSDLALP 
AARQALEQAG LTPDSLTHIF VATFTPDAYV PSAACVLQHK LGASQAMAMD LAAACSGFLY
SLETARAFLA IHPEAKILVV GSEVITSRTN FTDRSTCVLF GDAAGAAVLG NQDNAIAALD
DVLLGADGSL GDLLVVRGGG SGAPVALGES VDESFFVQMQ GSEVFRHAVR SMASITNQVL
ARAGLSAKDI DLFIPHQANI RIIEALAKKL AFPIDKVYVN VNRFGNSSAA SVPLALSEAL
QEGYIPEDAT VLLASFGGGF TWGAALLKFG RGH