Gene Dret_1397 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDret_1397 
Symbol 
ID8419226 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfohalobium retbaense DSM 5692 
KingdomBacteria 
Replicon accessionNC_013223 
Strand
Start bp1631429 
End bp1632430 
Gene Length1002 bp 
Protein Length333 aa 
Translation table11 
GC content59% 
IMG OID645037972 
Productglyceraldehyde-3-phosphate dehydrogenase, type I 
Protein accessionYP_003198262 
Protein GI258405520 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG0057] Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase 
TIGRFAM ID[TIGR01534] glyceraldehyde-3-phosphate dehydrogenase, type I 


Plasmid Coverage information

Num covering plasmid clones25 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones24 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCCGTTC GTGTCGCACT CAACGGATTC GGGCGTATTG GCCGATATAT GGCCCGGTTG 
TTGTCCGCAA ACACTGACCT GGAACTGGTG GCGGTCAACG CCCGAGCGGA TAATGCTACC
CTGGCCCATC TTCTCAAATA CGATTCCGTC CACCGGACCT TTGCGGGGAC AGTCGAGGCC
AATGAGCAAG GGTTTCTTTT GGAAGGCCAG CAGGTCACAG TGGCCCGAAA CAAACCGGGG
GAATGGACCT GGGGCGAACT CGGGGTGGAT ATTGTTCTGG AGACCACAGG CAAATTCACG
GACCGTGAGA GCTGCGAAAA GCATCTGGCC TGCGGCGCGA AACGGGTTGT GGTCAGCGCC
CCGGCCAAAC AACCGGACGT GATGGTTGTT ATGGGGGTTA ACGACAGCGA TCTGGGCCCT
GAGCACAAGA TCGTCTCCAA CGCGTCCTGC ACGACCAATT GTCTGGCTCC GGCGGCCAAA
GTCCTGCACG ATAATTTTGG TCTTGAACGC GGCCTGATGA CCACGGTGCA CTCGTATACC
ATGAGCCAGC GCATTTTGGA CGGGTCGCAC AAGGACTTGC GCCGGGCCCG TGCCGCGGCT
ATGTCCATGC TTCCGACGAC CACCGGGGCG GCCAGAGCGG TGACGAAAGT TATCCCCTCG
CTGGAGGGCA AGCTCGACGG CATGGCCATC CGGGTCCCGA CCCCGAACGT TTCGCTGGTC
GATTTGAGCG CCGATCTGGG CAGGGCCACC TCCGCTGAAG AAATCAACGC GGCGATGAAA
GCCGCCTCTG AAGGGCCAAT GCAAGGGATT CTCGGCTATA GTGAGGAACC GCTTGTTTCG
GTGGACTATA CCGGATCGAC TTACGGCGGT GTCCTTGACG CGTTGACGAC AAGTGTCATG
GACGGCACCC TGGCCAAGAT CATCGTCTGG TACGACAATG AATCGGGGTT TTCCAATCAG
CTGCTGCGTC TGACACAGCG GGTCGCCTCG TTGCTTGGCT GA
 
Protein sequence
MAVRVALNGF GRIGRYMARL LSANTDLELV AVNARADNAT LAHLLKYDSV HRTFAGTVEA 
NEQGFLLEGQ QVTVARNKPG EWTWGELGVD IVLETTGKFT DRESCEKHLA CGAKRVVVSA
PAKQPDVMVV MGVNDSDLGP EHKIVSNASC TTNCLAPAAK VLHDNFGLER GLMTTVHSYT
MSQRILDGSH KDLRRARAAA MSMLPTTTGA ARAVTKVIPS LEGKLDGMAI RVPTPNVSLV
DLSADLGRAT SAEEINAAMK AASEGPMQGI LGYSEEPLVS VDYTGSTYGG VLDALTTSVM
DGTLAKIIVW YDNESGFSNQ LLRLTQRVAS LLG