| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dret_1366 |
|---|
| Symbol | |
|---|
| ID | 8419195 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfohalobium retbaense DSM 5692 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013223 |
|---|
| Strand | - |
|---|
| Start bp | 1593073 |
|---|
| End bp | 1595316 |
|---|
| Gene Length | 2244 bp |
|---|
| Protein Length | 747 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 645037942 |
|---|
| Product | ATP-dependent Clp protease, ATP-binding subunit clpA |
|---|
| Protein accession | YP_003198232 |
|---|
| Protein GI | 258405490 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0542] ATPases with chaperone activity, ATP-binding subunit |
|---|
| TIGRFAM ID | [TIGR02639] ATP-dependent Clp protease ATP-binding subunit clpA |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.000942242 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 0.444853 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTCAGTA AGGAACTTGA GAGAATATTC GCGTCGGCAG TTCACGAAGT AAAAAGGCGT
CAGCATGAGT TCCTGACGCT CGAACATATA TTGTATGCAT ATGTCCAAGA TACGAACGGG
AAGGCCTTTT TGCACCATTG CGGGGCGAAT CTCAAAGAAT TGAAGACTGA ACTTGAGCAG
TTCTTTGTGA ACCACCTCGA GGTCTATCCG AGTGGACAAT CCAGAGAAGT CATCCAGACC
TTAAGCGTCC AGCGGGTTTT GCAACGCGCG ATCATGCACA TGCAATCCGC GGGCAAGGAA
GCGGTTCAGG TCGGCGATCT TCTGGCCTCG CTTCTCGAGG AAGAGGAGTC CTACGCAGCC
TACTATTTGC GCCATCAGGG CGTCGAGCGA TTGGATGTAC TCGAATACCT CTCCCACGGC
CAGGAACACC AGACTGCTGA GGAAAGCGCC GAGAGCAAGG GCAGTTCAGC CCTGGACCAG
TATGCGGTGG ATCTGATCCA GCGCGCCAGG GACGGCATGA TCGACCCCTT GATCGGTCGC
GAAGGAGAGC TGCAGCGGAC CGTGCAAGTG CTGGCCCGGC GGCGGAAAAA CAACCCCATT
TATGTCGGGG ATCCCGGCGT GGGCAAGACC GCCTTGGCCG AGGGGCTGGC TCGGAACATC
GTGAATAAAG AGGTGCCGGA GTCGTTTCAG GACGCGCGCC TCTTCAGCCT CGATATGGGG
GCCTTGTTGG CCGGCAGTAA ATACCGCGGC GATTTTGAGG CGCGTTTGAA GGCTGTGATC
AAGGAATTGA CCCAGATGGA CAAGGCCATC TTGTTCATCG ATGAGATCCA CACCATTGTT
GGGGCCGGCG CTACCAGCGG CGGCAGCATG GATGCCTCCA ATATCCTCAA GCCGGTCTTG
GCCTCCGGGG AGTTGCGGTG TATTGGATCG ACCACATATG AAGAGTACAA AAACCATTTT
GAAAAAGACC GCGCCCTGTC CAGGCGATTT CAGAAGATTG AGGTCCCGGA GCCGTCCGAA
GCCGACTCGA TCGCGATCCT TCAAGGGTTG CGTCCCTATT ACGAACGGCA CCACGGTATC
CAGTACACGA CCGCAGCCAT CCGGGCCGCC GTGGAACTGA CCTCACGGTA TGTTTCAGAC
AAATATCTTC CGGACAAGGC CATAGATGTT GTCGATGAGG CCGGCGCTTT GTTCCGTCTG
GAGACGGGGA AGAAGCGGCG CAAGCGTGTG ACCCCGAAGG ATATCGAGAA AGTTGTGGCC
AGTGTCGCCA AGGTCCCGAT CAAAAGTGTC AGCCATTCGG ACAAGGAGCG GTTGGCGCAC
CTCGACTCTG AACTCAAAGG GGTCGTCTTT GGTCAAGACA AGGCGGTTTC GGTCATCGGC
CAGTCGATCA AGCGTTCCCG GGCCGGATTG CGGGAAGCTG GAAAGCCGGT GGGCAATTTC
CTGCTGGTCG GCCCCACGGG TGTGGGCAAG ACCGAATTGG CCAAGCAGCT GTCCAACGTG
CTGGGCATTC ACTTTATGCG CTTTGACATG AGTGAATACA TGGAAAAGCA CGCGGTGGCC
CGGCTTATCG GGGCGCCCCC TGGCTATGTG GGCTTTGATC AGGGCGGTTT GTTGACCGAC
GCGGTGCGCA AGCATCCCCA TTGCGTCCTG CTTTTGGACG AGGTCGAAAA AGCGCATCCG
GACCTGTTTA ATATCTTGCT TCAGGTCATG GATTACGCGA CATTGACGGA CAATAACGGC
CGTAAGGCGG ATTTTCGTCA CGTCGTTTTG CTTATGACCT CGAATGCCGG GGCCCGGGAA
ATGAGCAGCA AGAGCATCGG TTTTGGCCAG GAATCGGCCG GCGAAAAGAC CAACAAAGGG
GTCCGGGCTG CAGAACAATT GTTCAGCCCC GAATTCCGTA ACCGCCTGGA TGCCATTGTC
CCCTTTGCTC CGCTGAGTCA GGCGCTGATG GAACAGATCG TGGACAAATT CATTGCCGAA
CTCAATGCCC AACTCGCTGA GAAACGAGTT CATATCCATC TCCAACCCAA GGCGAAAGCG
GTACTGGCCC GCAAAGGATA TGATCCCGAC TATGGCGCTA GGCCGCTTGG GCGCGTTCTC
CAGGAAGAGA TCAAGGACAA GCTTGCTGAC GCCATGCTGT TCGGTAAGCT GCAGGACGGG
GGAGAAGTCG TTGTTGGGAC ACGCAAATCC GGAACAGAGG ATCAACTGAG TTTGCGTTTC
CAGTCGCGCG ATTCCAAGAG CTAA
|
|---|
| Protein sequence | MLSKELERIF ASAVHEVKRR QHEFLTLEHI LYAYVQDTNG KAFLHHCGAN LKELKTELEQ
FFVNHLEVYP SGQSREVIQT LSVQRVLQRA IMHMQSAGKE AVQVGDLLAS LLEEEESYAA
YYLRHQGVER LDVLEYLSHG QEHQTAEESA ESKGSSALDQ YAVDLIQRAR DGMIDPLIGR
EGELQRTVQV LARRRKNNPI YVGDPGVGKT ALAEGLARNI VNKEVPESFQ DARLFSLDMG
ALLAGSKYRG DFEARLKAVI KELTQMDKAI LFIDEIHTIV GAGATSGGSM DASNILKPVL
ASGELRCIGS TTYEEYKNHF EKDRALSRRF QKIEVPEPSE ADSIAILQGL RPYYERHHGI
QYTTAAIRAA VELTSRYVSD KYLPDKAIDV VDEAGALFRL ETGKKRRKRV TPKDIEKVVA
SVAKVPIKSV SHSDKERLAH LDSELKGVVF GQDKAVSVIG QSIKRSRAGL REAGKPVGNF
LLVGPTGVGK TELAKQLSNV LGIHFMRFDM SEYMEKHAVA RLIGAPPGYV GFDQGGLLTD
AVRKHPHCVL LLDEVEKAHP DLFNILLQVM DYATLTDNNG RKADFRHVVL LMTSNAGARE
MSSKSIGFGQ ESAGEKTNKG VRAAEQLFSP EFRNRLDAIV PFAPLSQALM EQIVDKFIAE
LNAQLAEKRV HIHLQPKAKA VLARKGYDPD YGARPLGRVL QEEIKDKLAD AMLFGKLQDG
GEVVVGTRKS GTEDQLSLRF QSRDSKS
|
|---|
| |