Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dret_1351 |
Symbol | |
ID | 8419180 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Desulfohalobium retbaense DSM 5692 |
Kingdom | Bacteria |
Replicon accession | NC_013223 |
Strand | + |
Start bp | 1577999 |
End bp | 1579222 |
Gene Length | 1224 bp |
Protein Length | 407 aa |
Translation table | 11 |
GC content | 54% |
IMG OID | 645037927 |
Product | L,L-diaminopimelate aminotransferase |
Protein accession | YP_003198217 |
Protein GI | 258405475 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0436] Aspartate/tyrosine/aromatic aminotransferase |
TIGRFAM ID | [TIGR03542] LL-diaminopimelate aminotransferase |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.0206949 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 25 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATACAAA TCAATGAAAA TTACTTGAAA TTGCAGGCCT CCTATCTTTT TGCCGACATT GCCAAGCGTA TCCAGGCCTT TCAGGAGGCC AACCCGGACA TGCCGATCAT CAAACTGGGC ATCGGCGATG TGACCAAGCC TCTTCCCCAG GCCTGCATCG AAGCGATGCA CAAAGCTGTG GACGAAATGG GAGAGGAGTC TTCCTTCCAC GGATACGGCC CGGAACAAGG CTACGCCTTC TTGCGTGAAA CCATCGCCAA GCACGATTTC CAGGCCCGTG GAGCTGAGAT AAGCGCAGAC GAAATTTTCA TCAGCGACGG GGCCAAATGC GACACGGGCA ACATTCAGGA GATTCTGGCC ACAGACATCT CCATCGCGAT TCCCGATCCG GTCTACCCCG TCTACCGCGA CACGAATGTC ATGGCCGGAC GCACCGGCGA GTTCAAGGAT GGCCGCTTTG AAGGCATCAC CTATCTCGAA AGCACGGCGG ACAATAATTT TATCCCTGAA ATCCCTGAAA AAGCAGTGGA TTTAATCTAC CTTTGCTTCC CCAACAATCC CACAGGCGCG ACCATTACCA AAGCCGAACT CCAGAAATGG GTCGATTATG CCCGGGAGCA CAAGGCGCTG ATCCTCTTTG ATGCAGCGTA CGAAGCATTT ATCCAGGATC CGGAACTGCC GCGTTCCATC TATGAGATTC CTGGGGCCAA GGAAGTCGCC ATCGAATTCA GGAGCTTTTC CAAAACGGCC GGTTTTACCG GTACCCGGTG CGCTTTCACC GTCGTGCCCA AAGAGTGCAT GGGCTACGAC AGCAGTGGTA AAGCCCATTC GCTGCACGCC CTGTGGAACA GGCGCCATTC CACCAAGTTC AACGGGGTAG CCTATCCGGT TCAGCGCGCT GCCGAAGCCG TTTACTCCAA ACAGGGACAG GCCGAAACCC AGGAACGCAT CGCGTATTAT CTTGAAAACG CACGCCTTGT TCGCGAAGCC ATGGCCGAGC AGGGCTTTGA GTGTGTGGGA GGGGAGAATT CTCCATATAT CTGGATCCGC GGCAACATGG ATTCCTGGGA ATTTTTCGAT CTCCTGCTGA ATAAAGCTGG TGTGGTCTGC ACCCCCGGGG CTGGATTCGG GCAATGCGGC GAGGGGTATA TCCGCATTTC AGCATTCAAT AGCCGGGAAA ACGTGGTCGA AGCCATGAAG CGGTTTCGTG AAGCGCTGGC CTAA
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Protein sequence | MIQINENYLK LQASYLFADI AKRIQAFQEA NPDMPIIKLG IGDVTKPLPQ ACIEAMHKAV DEMGEESSFH GYGPEQGYAF LRETIAKHDF QARGAEISAD EIFISDGAKC DTGNIQEILA TDISIAIPDP VYPVYRDTNV MAGRTGEFKD GRFEGITYLE STADNNFIPE IPEKAVDLIY LCFPNNPTGA TITKAELQKW VDYAREHKAL ILFDAAYEAF IQDPELPRSI YEIPGAKEVA IEFRSFSKTA GFTGTRCAFT VVPKECMGYD SSGKAHSLHA LWNRRHSTKF NGVAYPVQRA AEAVYSKQGQ AETQERIAYY LENARLVREA MAEQGFECVG GENSPYIWIR GNMDSWEFFD LLLNKAGVVC TPGAGFGQCG EGYIRISAFN SRENVVEAMK RFREALA
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