Gene Dret_1351 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDret_1351 
Symbol 
ID8419180 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfohalobium retbaense DSM 5692 
KingdomBacteria 
Replicon accessionNC_013223 
Strand
Start bp1577999 
End bp1579222 
Gene Length1224 bp 
Protein Length407 aa 
Translation table11 
GC content54% 
IMG OID645037927 
ProductL,L-diaminopimelate aminotransferase 
Protein accessionYP_003198217 
Protein GI258405475 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0436] Aspartate/tyrosine/aromatic aminotransferase 
TIGRFAM ID[TIGR03542] LL-diaminopimelate aminotransferase 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.0206949 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones25 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATACAAA TCAATGAAAA TTACTTGAAA TTGCAGGCCT CCTATCTTTT TGCCGACATT 
GCCAAGCGTA TCCAGGCCTT TCAGGAGGCC AACCCGGACA TGCCGATCAT CAAACTGGGC
ATCGGCGATG TGACCAAGCC TCTTCCCCAG GCCTGCATCG AAGCGATGCA CAAAGCTGTG
GACGAAATGG GAGAGGAGTC TTCCTTCCAC GGATACGGCC CGGAACAAGG CTACGCCTTC
TTGCGTGAAA CCATCGCCAA GCACGATTTC CAGGCCCGTG GAGCTGAGAT AAGCGCAGAC
GAAATTTTCA TCAGCGACGG GGCCAAATGC GACACGGGCA ACATTCAGGA GATTCTGGCC
ACAGACATCT CCATCGCGAT TCCCGATCCG GTCTACCCCG TCTACCGCGA CACGAATGTC
ATGGCCGGAC GCACCGGCGA GTTCAAGGAT GGCCGCTTTG AAGGCATCAC CTATCTCGAA
AGCACGGCGG ACAATAATTT TATCCCTGAA ATCCCTGAAA AAGCAGTGGA TTTAATCTAC
CTTTGCTTCC CCAACAATCC CACAGGCGCG ACCATTACCA AAGCCGAACT CCAGAAATGG
GTCGATTATG CCCGGGAGCA CAAGGCGCTG ATCCTCTTTG ATGCAGCGTA CGAAGCATTT
ATCCAGGATC CGGAACTGCC GCGTTCCATC TATGAGATTC CTGGGGCCAA GGAAGTCGCC
ATCGAATTCA GGAGCTTTTC CAAAACGGCC GGTTTTACCG GTACCCGGTG CGCTTTCACC
GTCGTGCCCA AAGAGTGCAT GGGCTACGAC AGCAGTGGTA AAGCCCATTC GCTGCACGCC
CTGTGGAACA GGCGCCATTC CACCAAGTTC AACGGGGTAG CCTATCCGGT TCAGCGCGCT
GCCGAAGCCG TTTACTCCAA ACAGGGACAG GCCGAAACCC AGGAACGCAT CGCGTATTAT
CTTGAAAACG CACGCCTTGT TCGCGAAGCC ATGGCCGAGC AGGGCTTTGA GTGTGTGGGA
GGGGAGAATT CTCCATATAT CTGGATCCGC GGCAACATGG ATTCCTGGGA ATTTTTCGAT
CTCCTGCTGA ATAAAGCTGG TGTGGTCTGC ACCCCCGGGG CTGGATTCGG GCAATGCGGC
GAGGGGTATA TCCGCATTTC AGCATTCAAT AGCCGGGAAA ACGTGGTCGA AGCCATGAAG
CGGTTTCGTG AAGCGCTGGC CTAA
 
Protein sequence
MIQINENYLK LQASYLFADI AKRIQAFQEA NPDMPIIKLG IGDVTKPLPQ ACIEAMHKAV 
DEMGEESSFH GYGPEQGYAF LRETIAKHDF QARGAEISAD EIFISDGAKC DTGNIQEILA
TDISIAIPDP VYPVYRDTNV MAGRTGEFKD GRFEGITYLE STADNNFIPE IPEKAVDLIY
LCFPNNPTGA TITKAELQKW VDYAREHKAL ILFDAAYEAF IQDPELPRSI YEIPGAKEVA
IEFRSFSKTA GFTGTRCAFT VVPKECMGYD SSGKAHSLHA LWNRRHSTKF NGVAYPVQRA
AEAVYSKQGQ AETQERIAYY LENARLVREA MAEQGFECVG GENSPYIWIR GNMDSWEFFD
LLLNKAGVVC TPGAGFGQCG EGYIRISAFN SRENVVEAMK RFREALA