Gene Dret_1350 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDret_1350 
Symbol 
ID8419179 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfohalobium retbaense DSM 5692 
KingdomBacteria 
Replicon accessionNC_013223 
Strand
Start bp1577101 
End bp1577754 
Gene Length654 bp 
Protein Length217 aa 
Translation table11 
GC content58% 
IMG OID645037926 
Producttransaldolase 
Protein accessionYP_003198216 
Protein GI258405474 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG0176] Transaldolase 
TIGRFAM ID[TIGR00875] fructose-6-phosphate aldolase, TalC/MipB family 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value0.0395427 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones25 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGCTTCT TTCTCGATAC TGCCAACCGG GGAGATATTG CCCAGGCCCA CCAATGGGGA 
TTGATCGACG GCGTGACCAC CAATCCTTCC CTGCTGGCGA AAGAGGGCGG CGACTGGCGC
GCTGTGGCCC GCGAGATCTG TGATCTGGTT GAAGGCCCAG TGAGCCTGGA GGTCATTGCT
ACGGAGACCG AAGCCATGAT CGCTGAGGCC AGGGACTTGG TCAAAATCGC CCCCAACGTC
GTGGTCAAGA TCCCCATGAC CCTGCCCGGG TTGCAGGCGG TGCGCGACCT TGCCGCCCAG
GAGATCCCGA CCAATGTGAC ACTGGTTTTT TCACCAGCCC AAGCCCTGCT CGCGGCCAAG
GCCGGCGCCT CCTATATCAG TCCGTTCGTC GGCCGCCTCG ATGATATCGG ACACAACGGC
ATGGATATCG TTGCACAGAT ACTCGAGATA TTTCAAAATT ACAATTTCCA GGCCGAGGTA
CTGGTTGCAA GTGTCCGTCA CAGCAACCAT GTCCTGGAAG CGGCGCAGCT CGGGGCGGAT
ATCGTCACAC TGCCTATGGC GGTGCTCAAA AAATTGGCTG GCCATCCTCT GACCGATCAG
GGCCTGGAAA AATTTCTGGC GGACTGGAAG ACGCTGGATT CTAGCACCTC CTAG
 
Protein sequence
MRFFLDTANR GDIAQAHQWG LIDGVTTNPS LLAKEGGDWR AVAREICDLV EGPVSLEVIA 
TETEAMIAEA RDLVKIAPNV VVKIPMTLPG LQAVRDLAAQ EIPTNVTLVF SPAQALLAAK
AGASYISPFV GRLDDIGHNG MDIVAQILEI FQNYNFQAEV LVASVRHSNH VLEAAQLGAD
IVTLPMAVLK KLAGHPLTDQ GLEKFLADWK TLDSSTS