Gene Dret_1345 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDret_1345 
Symbol 
ID8419174 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfohalobium retbaense DSM 5692 
KingdomBacteria 
Replicon accessionNC_013223 
Strand
Start bp1571378 
End bp1572112 
Gene Length735 bp 
Protein Length244 aa 
Translation table11 
GC content55% 
IMG OID645037921 
Productextracellular solute-binding protein family 3 
Protein accessionYP_003198211 
Protein GI258405469 
COG category[E] Amino acid transport and metabolism
[T] Signal transduction mechanisms 
COG ID[COG0834] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones28 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones22 
Fosmid unclonability p-value0.706269 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGCTCAAAA AATTGCTCTT CACTGTCCTG GCCATTTGTC TTGGCGCTCA AATGGCTGTG 
GCCAAGGAGA TTGTCTTCGC CGTGGACGCC ACATGGCCAC CGATGGAATT CGTAAACTCG
GAAAAAGAGA TTGTCGGGTA TTCCATCGAT TTCATGACCG CCGCGGCTGA AGAAGCCGGA
TTTACCCCTG TGTTCAAGAA TGTTGCCTGG GACGGGATCT TCGCCGGATT GGCCGGTGGC
AATTATGACG CCATCTGTTC GTCTGTGAGC ATCACCGAGG AACGCAAAGA GGCTATGGAT
TTCAGCGAAC CCTATTTCCA GGTCCAGCAG GCCCTTGTCG TTCCGAAAGA CGTTGAGGCC
AAAACACTTG AGGATCTTGA GGGCGAGCCT GTCGGCGCCC AGATCGGGAC CACCGGCTAT
TTTACTATCA AGGACGACGG TGCCCCGGAA CCCAAGTCGT ACGATGAAAT CGGCCTGGCC
ATGCAGGACC TGCTCAACGG CCGTTTGGCA GGCGTGGTCT GCGACGACCC GGTGGCCGCC
AATTATGCCA AGCAAGAGGA AGGGTTCTCA GATGCCCTGA AGATCGCGGC CATTTTGGAA
TCCGACACCG AAGAGTATTA CGGTATCGCT CTGAAAAAAG GCAATGAAGA CCTGCTCAAG
CTGATCAACA AAGGCATCCG GGCAGTCAAG GACAAGGGGC TGGACGCGGA ATTGCGCGCC
AAGTGGATCG AATAA
 
Protein sequence
MLKKLLFTVL AICLGAQMAV AKEIVFAVDA TWPPMEFVNS EKEIVGYSID FMTAAAEEAG 
FTPVFKNVAW DGIFAGLAGG NYDAICSSVS ITEERKEAMD FSEPYFQVQQ ALVVPKDVEA
KTLEDLEGEP VGAQIGTTGY FTIKDDGAPE PKSYDEIGLA MQDLLNGRLA GVVCDDPVAA
NYAKQEEGFS DALKIAAILE SDTEEYYGIA LKKGNEDLLK LINKGIRAVK DKGLDAELRA
KWIE