| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dret_1344 |
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| Symbol | |
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| ID | 8419173 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfohalobium retbaense DSM 5692 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013223 |
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| Strand | - |
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| Start bp | 1570478 |
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| End bp | 1571281 |
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| Gene Length | 804 bp |
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| Protein Length | 267 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 645037920 |
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| Product | polar amino acid ABC transporter, inner membrane subunit |
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| Protein accession | YP_003198210 |
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| Protein GI | 258405468 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0765] ABC-type amino acid transport system, permease component |
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| TIGRFAM ID | [TIGR01726] amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family |
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 0.755534 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGCAGAGC AAACCACTGA CAAAAAGCCT TCCAATGTCC GCATCGACGT CTCCGATGGG
GCCGCCATCC CCTCTTCCGG GGACAAGGGG CTCTTCACGG CGTGGCGGAT CTCCTTTTTC
GGCGCCATCG CCATCATCAT CGCACTGTGC GTCTCCAAGC CCGATCCCTA TCTCGATATT
CTGAAGTTTG TTCCCGACGG CATTCTGGTC ACCTTTGAAG TGACCATGCT GGCTATATTT
CTTTCCCTGG TCGTCGGGTT GATCGCCGGA TTGGGGCGCA TATCCCGTAT CCCTATTGTC
AATCTGACCG CCTCGACCTA TGTCGAAGTC GTCCGCGGCA TCCCTCTTTT GGTCCAATTG
TTCTATATCT ACTACGCTCT GGGCAGTTTC ATGCAGGTGC CGCCGTTTTT TGCGGCTATC
ATCGCCATGA CTGTGTGCTA TGGGGCGTAT ATGGGCGAAA TTTTTCGGGC CGGTATCGAA
TCCATTGATT ATGGGCAGAC AGAAGCGGCC CGCTCGCTGG GCTTCAGCCG CGGGCAGACT
ATGTTCTATG TCATCATCCC CCAGGCCATG CGGACGATTC TGCCCCCGGT GGGCAATGAA
TTTATTGCCT TGTTGAAGGA CACGTCCCTG GTGTCCATCA TCGCGGTGTC AGACTTGTTG
CGCCGGGGGC GCGAATTCGC GACAGAGTCC TTCGATTATT TTGAGACCTA TACCATGGTC
GCTCTCTTGT ACCTGCTTAT CACCCTGTTT TTATCCAAGA TCGTCAGTAT CATGGAAGCA
AAGTTGACCC CCAATGACAA ATAA
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| Protein sequence | MAEQTTDKKP SNVRIDVSDG AAIPSSGDKG LFTAWRISFF GAIAIIIALC VSKPDPYLDI
LKFVPDGILV TFEVTMLAIF LSLVVGLIAG LGRISRIPIV NLTASTYVEV VRGIPLLVQL
FYIYYALGSF MQVPPFFAAI IAMTVCYGAY MGEIFRAGIE SIDYGQTEAA RSLGFSRGQT
MFYVIIPQAM RTILPPVGNE FIALLKDTSL VSIIAVSDLL RRGREFATES FDYFETYTMV
ALLYLLITLF LSKIVSIMEA KLTPNDK
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