| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dret_1329 |
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| Symbol | |
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| ID | 8419158 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfohalobium retbaense DSM 5692 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013223 |
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| Strand | + |
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| Start bp | 1554593 |
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| End bp | 1555546 |
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| Gene Length | 954 bp |
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| Protein Length | 317 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 645037905 |
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| Product | Rhomboid family protein |
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| Protein accession | YP_003198195 |
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| Protein GI | 258405453 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0705] Uncharacterized membrane protein (homolog of Drosophila rhomboid) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.0879302 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 0.29151 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCGACG TTTCCCCCCA CCATACTCAG CATTTCTGTC CTGCCGGGTG GGTCGAGCTC
ACCAGCCAGG CCCGTTTGGC TCAGGGACGG CAAACCATCT CCTTGTATTG CCTTGTGCTT
GCCTCCCGCG GCATACCATA TCAACTCCAG AGCACCTCTG AACAACGAAT CCTCTGCGTC
CCCGAATCCT GGCTGGAGAC CGCCCGCAAC GAACTGGAAA CATTTGCTCT GGAAGAGGAG
GCTTGGCACA ATCCCGAACC AGGTCACGTC CCGCTTCGCT ATGGCCGGAT CGAGCCAACG
CTGTGGGTCT TTTTCGGCCT GTTTGTCTTC CATCTGCTGA CCACCGCCAC CGTCTACGAA
GGGCTTGGTC ATATCGCTTG GCAGGAGTGG GGCAGCGCCA AGGAATGGCT CATCTTGCAG
GGCGAACTCT GGCGCAGCGG CACGGCCCTG ACCCTGCACG CCGACAGCGC CCATCTGGCG
GGTAACATCG GCCTGGGCGC CCTTTTTGTC GCCCTGTTGT GCCGGGAAAT CGGGTCGGGT
TGGGGCTGGC TGATAGTTGT GGGCAGCGGT ATGCTCGGCA ATATCGGCAA TGCCTGGATC
AGCACTTACG GCCATACAGC CGTGGGGGCC TCAACCGCGG TGTTTGGGGC AGTGGGGGCG
ATCGGCGGCC TGCGTGCCTG GCAGGGCCGC GGCAACCGGG TCGTCCTCGA CAGCCTGCTT
CCTTTGGGCG CTGGTCTGGG GATTTTGGCC ATGCTGGGCA CCGGAGGGGG CAATACGGAC
GTAGGGGCCC ATTTTTGGGG CTTTGGATGC GGCGTGGTCC TCGGCAATCT CTTTGGCGGA
GCCTTGCGTC TGAGTTGGGT CCCTTCATCG CGCAGCAACC GCTGGGCAGG GCTGACCGCA
GCGGCGCTCA TAGGCGGATC CTGGCTTTTG GCCATTAGCA CCCAGATCTC GTGA
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| Protein sequence | MSDVSPHHTQ HFCPAGWVEL TSQARLAQGR QTISLYCLVL ASRGIPYQLQ STSEQRILCV
PESWLETARN ELETFALEEE AWHNPEPGHV PLRYGRIEPT LWVFFGLFVF HLLTTATVYE
GLGHIAWQEW GSAKEWLILQ GELWRSGTAL TLHADSAHLA GNIGLGALFV ALLCREIGSG
WGWLIVVGSG MLGNIGNAWI STYGHTAVGA STAVFGAVGA IGGLRAWQGR GNRVVLDSLL
PLGAGLGILA MLGTGGGNTD VGAHFWGFGC GVVLGNLFGG ALRLSWVPSS RSNRWAGLTA
AALIGGSWLL AISTQIS
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