Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dret_1307 |
Symbol | |
ID | 8419136 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Desulfohalobium retbaense DSM 5692 |
Kingdom | Bacteria |
Replicon accession | NC_013223 |
Strand | - |
Start bp | 1531575 |
End bp | 1532852 |
Gene Length | 1278 bp |
Protein Length | 425 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 645037883 |
Product | Extracellular ligand-binding receptor |
Protein accession | YP_003198173 |
Protein GI | 258405431 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 0.168587 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 15 |
Fosmid unclonability p-value | 0.0355411 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACCAGGA GATTTTCTTT TTTTCGGATG CTCCCCTTCG GAGTCTGGGT GGTCGCGGCG GTTGCCTCGC TGCTTTTGAG CGTCCCTGCG GCTCGGGCGC ATGGCATGGG TGAAACCGCG GATATTGTTT TGGGAATGTC TGCGGCCTTT ACTGGACCCT CACGGAGTCT GGGGATTGAA TTGTATCGCG GCGCCAACGC CTATTTTCAG AAAATCAATG CCAATGGCGG CGTCCACGGC CGGCGCATCA GGATCAAGGC CTATGACGAC GGTTACGATC CCGATCCCGC CCTGCGCAAC ACCATTCGTC TGGTCAAGGA AGACCATGTT TTTGCCCTCT TCGGGTACGT TGGTACGCCG ACCACGACCC GTATCCTTCC TCTGCTGGAA AAATTCCGAG ACCAGCCCCT GCTCTTGTTT TTTCCCATGA CCGGGGCGCA GCCCTTGCGC GAATCGCCCT ACCGCCAATA CATCTTCAAC CTGCGCGCCT CTTATTTTCA GGAGACCCAG CGGCTGGTCG AGAGTTTTTT GAGTGTCGGA CGGGAACGGA TCGGGGTCTT GTATCAGGCC GACGCCTATG GGCGAAACGG ATGGGACGGC GTCCGCCGGA CATTGCGCGA ATACAACCTC CAATTGACCG GCGAGGCGTG CTACCGCCGC GGCGCTACGG CTGCAACGGA TATGGGCGAA CAGATACGCA TTTTGCGCCA AAGCGGGGCT GAAGCGGTGA TCACCGTAGG AGCGGCCCAA GCGTGTGCCG CTTTTATCCG TCAAGCCAGG ACCCGGGGGT GGGAGGTGCC CATCGCCAAC CTCTCCTTCA CCCACGCCCA GCAGATGGCC AACTTTTTGC TGCTCAATTC GGACACCTAC CCGGACCAAC TCACCCGGCG CGTTCTCAAT GCCCATGTCG TTCCGAATCT CCAGGACACT TCGATTCCGG TGGTCCGCGA ATACCGGCGG GCCATGGATG CGGCCAATGA AGACGTTCCC GGGCATCTGC TGGACACCCC CTATACGCCG CACAGCTATG ACTATGTCAG TTTCGAGGGC TACCTCAACG CCAAACTCCT GGTGGAAATG CTCCGCCGGA CCGAGCCTCC GCTGACTCCA AAACGGGTCC GCAAAAGTAT CTACAAGCAC CGCCGCTATA CGATCGGCAT CGGATTGCCC TTGTTTTTCG GTCCCGAATA CAACCAGGGC CTGGACATCA TTTTTTTCAG CACCCTCCGA GCCGGGCGGG TTGAACCTTT ACGCAACTGG GATGCCTTCT CACCATGA
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Protein sequence | MTRRFSFFRM LPFGVWVVAA VASLLLSVPA ARAHGMGETA DIVLGMSAAF TGPSRSLGIE LYRGANAYFQ KINANGGVHG RRIRIKAYDD GYDPDPALRN TIRLVKEDHV FALFGYVGTP TTTRILPLLE KFRDQPLLLF FPMTGAQPLR ESPYRQYIFN LRASYFQETQ RLVESFLSVG RERIGVLYQA DAYGRNGWDG VRRTLREYNL QLTGEACYRR GATAATDMGE QIRILRQSGA EAVITVGAAQ ACAAFIRQAR TRGWEVPIAN LSFTHAQQMA NFLLLNSDTY PDQLTRRVLN AHVVPNLQDT SIPVVREYRR AMDAANEDVP GHLLDTPYTP HSYDYVSFEG YLNAKLLVEM LRRTEPPLTP KRVRKSIYKH RRYTIGIGLP LFFGPEYNQG LDIIFFSTLR AGRVEPLRNW DAFSP
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