| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dret_1306 |
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| Symbol | |
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| ID | 8419135 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfohalobium retbaense DSM 5692 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013223 |
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| Strand | - |
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| Start bp | 1529287 |
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| End bp | 1531578 |
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| Gene Length | 2292 bp |
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| Protein Length | 763 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 645037882 |
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| Product | PAS/PAC sensor hybrid histidine kinase |
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| Protein accession | YP_003198172 |
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| Protein GI | 258405430 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5002] Signal transduction histidine kinase |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.147703 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.027228 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATAGTTT CCCGCCTGTT CAAAAAAACG CTGCTGATCA TGGTCGTCCT CTTCGGGCTT
CTGGCGGCCG CCATTTCACT GTTTTCGGCC TGGACCTTGT ATTCGCACAT GCGCACCGAG
TATGAGAGCA AGGCCTTGGC CATTGCCGAA TCCATGAGCC AGTCCAGCGC CGAGACCTTT
GTCAATAACC AGGCCACTCG GGTCCAATCC TTGATCAACC AGTTCCTCGA TGTCGAAGGC
GTGGCGTATG TCTTTGCGAC CACGGAATAC GGTGACGTCA TTGCACATAC CTTTGTACCT
GCGTTTCCAG AGACCTTTCA GGAGTGGCTG CCGCGCAATC TGCCCCGGCA TTCCCTTGGC
ACCGCACCGC AGACAGCGAG TGTCGACCTT GGTCAGCGGG GACGGTTTCT GCACATCGCC
GCCCCTATCC TGGCCGGCAG CGCCGGATAT CTCCACATCG GCATGAGCCT GGGGCGCATC
AATACCCTGA TCTGGAAAGC CATCGGCAGG ATACAGGTCA TTACGTTCGG GCTGTTCGTA
ATTTCAGTGG CCGTGGCCTA TTTCCTGGTC AACCGCATTG CGCATCCGTT GATGGCCCTG
GCCCAGTATT CGCGGCGGGT GGCCCGACAG GATTTCGAGG CCGAAGTGGA CATCCGGTCC
AATGATGAAA TCGGTGAATT GGCGGTGACC ATGCGGGATA TGGCCGCAGA ACTCCAGGAC
CACTTCCGGC AGCTCGAGGA GCAGATCACC ATCCGGCGCG AGGCCGAGGA AGCGCTGGCT
GCGGAAAAGG AACTTTTGGC CGTGACCATG CGTTCCATCG GGGACGGGGT GATCGCCACC
GATATCCGGG GCCGGGTCGT CCTCGTGAAC AAGGTCGCCG AACACCTCAC GGGCTGGTCC
CAGGAAGACG CCCTGGAACA AGAGGTGGAA ACCGTTTTCG CCCTGGTCTC GGCAATAGAT
GGCAGCAGTG TGCCCTGCCC TGCCAAACGC GCCTTGAAGC ATGGCGAAAT CTTTGAAATC
GACGATAATG TCCAGTTGCG GCAACCCTCG GGTCTGTGCA TCGATATCGG GGATTCGGCC
GCCCCCATCC GCGACCGTCA GAGCGTCATT ATCGGGGCGG TCATTGTCTT TCGCGATATA
CGTGAAGAAA AACGGCGGGA ACAAGAGCAC CTGCGTGCGG AAAAACTGGA GTCCCTCGGG
GTTTTGGCTG GGGGAATCGC TCATGATTTC AACAATATTT TGACCGCGAT CCTGAACAAT
ATCACCTTGG CCCGGGTCGG CCAGCGTCTG GATGTTGCAG TGGCCTCTAA ACTTCAGGAC
GCCGAGAGGG CGACCCAGCG CGCCAAAAAG CTCACCCAGC AACTGCTCGC GTTTTCTCAG
GGGGGCTTGC CGGTCACCCA GTGCGCCCCG CTGGATGAAC TCCTTGAGGA CGCGATCTCT
TTTGCCCTGC GCGGCTCTAA TGTGTGCTAC CGGGTCGACA TCCCGTCCGA TCTCTGGCCC
GTGCAGGTCG ACACCGGCCA GATCGCCCAG GTTTTCGACA ATCTGGCTAT CAATGCCAGT
CAGGCCATGG CCAATGGCGG GCAGTTAGAT ATCTGGGCTG AAAATGTGCC CTCCGCCGCG
ACGTTCTCCT CTGAGACCCA GACCAGCAGA GGCTACGTCA GAGTCCATTT CCAGGACAAC
GGCTGCGGCA TTCCCGAGGC GGACCAGGGC CAAATTTTCG ATCCCTACTT CACGACCAAA
CCAGAGGGCA GCGGGCTGGG ACTGTCCTCG GTCTTTTCGA TCATCAAACG CCACGGCGGC
ACCATCCATG TCCAGTCCGC TGAGGGCAGG GGGACGACCT TTACCCTCTA TCTTCCTGCG
GCAGAGGGAC GTCCGGACTG CGCCACACAG GCCAAGGACC GGCCCATAAC CGGTCAGGGA
CGGATTCTGG TCATGGACGA TGAAAAGGAA GTCCGTGACG TCCTGGGCGA TAGTCTGGAA
TATCTCGGGT ATGAGCCGAG TTTCGCGGCC AACGGCGAGC AGGTCCTCGA ACTCTACCGC
CAGCAATTGC AGGCTGGGGC GGGATTTGAT GCCGTGATCA TGGATTTGAC TGTTCCCGGT
GGCATGGGCG GCAAGGAAAC CATCAAGCAT CTCCATGAAC TCGATCGGGA GGTCCGGGCC
ATTGTCTCCA GTGGCTATTC CCAGGATCCG GTCATGGCCC GGTATCGGGA GTACGGTTTT
GCCGGCGTGT TGATGAAACC GTATACCCTG GAAGAGGTCG GCCAGAAACT CCGTTCGGTT
CTGCAAAATT AG
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| Protein sequence | MIVSRLFKKT LLIMVVLFGL LAAAISLFSA WTLYSHMRTE YESKALAIAE SMSQSSAETF
VNNQATRVQS LINQFLDVEG VAYVFATTEY GDVIAHTFVP AFPETFQEWL PRNLPRHSLG
TAPQTASVDL GQRGRFLHIA APILAGSAGY LHIGMSLGRI NTLIWKAIGR IQVITFGLFV
ISVAVAYFLV NRIAHPLMAL AQYSRRVARQ DFEAEVDIRS NDEIGELAVT MRDMAAELQD
HFRQLEEQIT IRREAEEALA AEKELLAVTM RSIGDGVIAT DIRGRVVLVN KVAEHLTGWS
QEDALEQEVE TVFALVSAID GSSVPCPAKR ALKHGEIFEI DDNVQLRQPS GLCIDIGDSA
APIRDRQSVI IGAVIVFRDI REEKRREQEH LRAEKLESLG VLAGGIAHDF NNILTAILNN
ITLARVGQRL DVAVASKLQD AERATQRAKK LTQQLLAFSQ GGLPVTQCAP LDELLEDAIS
FALRGSNVCY RVDIPSDLWP VQVDTGQIAQ VFDNLAINAS QAMANGGQLD IWAENVPSAA
TFSSETQTSR GYVRVHFQDN GCGIPEADQG QIFDPYFTTK PEGSGLGLSS VFSIIKRHGG
TIHVQSAEGR GTTFTLYLPA AEGRPDCATQ AKDRPITGQG RILVMDDEKE VRDVLGDSLE
YLGYEPSFAA NGEQVLELYR QQLQAGAGFD AVIMDLTVPG GMGGKETIKH LHELDREVRA
IVSSGYSQDP VMARYREYGF AGVLMKPYTL EEVGQKLRSV LQN
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