Gene Dret_1296 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDret_1296 
Symbol 
ID8419125 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfohalobium retbaense DSM 5692 
KingdomBacteria 
Replicon accessionNC_013223 
Strand
Start bp1517158 
End bp1518345 
Gene Length1188 bp 
Protein Length395 aa 
Translation table11 
GC content59% 
IMG OID645037872 
Productpermease YjgP/YjgQ family protein 
Protein accessionYP_003198162 
Protein GI258405420 
COG category[R] General function prediction only 
COG ID[COG0795] Predicted permeases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.00381796 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones18 
Fosmid unclonability p-value0.151885 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGCTGCCCC GGCGCCTTTC CCGGGAAATT TTCAAGGAGC TGGTCTACGT TTTCTCCTTA 
TGCCTGGGGT CGTTTTTGGC CCTGCTGTTG GTGGGACGTC TGCTCAAGCT CCGGGAACTC
TTTTTGTCCC AGGATGTCGC ACTGCTGGAC CTGGGACAAT TGTTTCTCTA TCTCAGCCCC
TTCTTTTTGC TCCTGCTATT GCCCATCGCC AGCATGCTCA GCGTCTTTTT GACCTTTCTG
CGCATGTCCA CAGACCGCGA ACTTGTCGCC CTGCGTGCCG CCGGCCTGAG CCTGTGGCAG
CTTTTGCCTG TGACGCTGCT CTTTTTATTG CTGTGTACCG CAGCCAATAT CGGCATCGGG
ATCTACGGGG TCTCCTGGGG CATGGACAAC TTCCGGGCCA CAATTCTCGA TATGGCCAAG
ACCCGAACCC AACTGGTCCT CCAGCCGGGG GTCTTCAATC AAGACTTCCC CGGGCTGACC
ATTTTTGCCC GTCAAGTGGA CCGGGAGACT GGCGATCTAT CCACTGTCTT TGTCGAGGAT
ACCAGTCGGG GGCAGGGGGC CATTGGTATC GTAGCCCCTC AAGGCAGCTT GACCACCGAC
ACCCGCAAAG GGCAGGTGGT CTTTTCGCTC AGAAACGGCC GCCTCTACCG CCACGACCGT
GATTCTGCGA GCGTTCTCGG CTTTGGCGAA TACCGGATCG CCCTGGATCT GGACAAAATC
ATCAGCGGCG TCGAACTCGA GGAAAAGCGC CCCAAAGAAA TGTCCTGGAC CCGGCTCATG
GACTACCGGC ATCAGGCAGA CCTGGCCCAG ACCCGGGACG CCACCTTTGA TCGCAAAGTC
GATGTTGAAA CGCACAAACG CTTGGCCCTG CCCCTGGCCT GTCTGGCCCT GGGCATCTTT
GCCATGCCCC TGGCCGCCCT GTTTGAAGGC CTTAAACGCC ACTTCGGCTT CCTGGTTTCC
CTGGGCTTGT TTCTGGTCTA CTACGCCCTG TTCTCCGCAG GCCTGAGCCT GGGGGAAACA
GGGACCCTCG CGCCAGCGAT CGGTTTGTGG GCCCCAAATA TCCTTTTTAT GGGACTCGGC
GGCATTTTGT TTCACATGGC CGCACGCGAG CGAGGGGGCA AGCTGCTCGA GCGGTTCGGG
TATATCCTCC GCAGTCTTCT TCCCCAGCGC AAAAGGAAAG CGGCATGA
 
Protein sequence
MLPRRLSREI FKELVYVFSL CLGSFLALLL VGRLLKLREL FLSQDVALLD LGQLFLYLSP 
FFLLLLLPIA SMLSVFLTFL RMSTDRELVA LRAAGLSLWQ LLPVTLLFLL LCTAANIGIG
IYGVSWGMDN FRATILDMAK TRTQLVLQPG VFNQDFPGLT IFARQVDRET GDLSTVFVED
TSRGQGAIGI VAPQGSLTTD TRKGQVVFSL RNGRLYRHDR DSASVLGFGE YRIALDLDKI
ISGVELEEKR PKEMSWTRLM DYRHQADLAQ TRDATFDRKV DVETHKRLAL PLACLALGIF
AMPLAALFEG LKRHFGFLVS LGLFLVYYAL FSAGLSLGET GTLAPAIGLW APNILFMGLG
GILFHMAARE RGGKLLERFG YILRSLLPQR KRKAA