| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dret_1293 |
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| Symbol | |
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| ID | 8419122 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfohalobium retbaense DSM 5692 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013223 |
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| Strand | - |
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| Start bp | 1514794 |
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| End bp | 1515876 |
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| Gene Length | 1083 bp |
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| Protein Length | 360 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 645037869 |
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| Product | polar amino acid ABC transporter, inner membrane subunit |
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| Protein accession | YP_003198159 |
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| Protein GI | 258405417 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0765] ABC-type amino acid transport system, permease component |
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| TIGRFAM ID | [TIGR01726] amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.0697282 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 0.837718 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGATCGCTT CAACTCCCTC TTGTACGACA CCGACGGCAA AGAGCAGGGC CCTGGTTGCC
CTGCTCTTTG CTTTTGCGTG CCTGAGCCTT CTCAATCCGG TCTCGGGGTG GACCCAAAAC
GGTCAGACGC CCCAGGACCC GACAGCCATC TTCCGCGAAG GCAGCAATGC CATGGCCTTG
GGCAAACTGG ACAAGGCTGT GCAACTGTTC AAAACAATTC CTCGCCCCGA ATCCGGGGAA
AGCGGCAAAC TTTTTGTCCA GAGCCGGATG CAATTGGCCC GAGTCTACTA CGCCCAGGAA
GATCTGGACA AGGCGGCGGC CGCCTGTCGA GAGATCCTGG CTGTGTATCC GGACAATGCC
GAAGCGACGA ATTTTCTGGC TTCGGTGGAG AAGGCCCAGA AGCCGTGGTA TATCCAGTTC
TGGCAGGACA CGGTCCGATT TACCCCGGCC CTGGCCAAAG GGGCGGTGAT GACATTCGTG
CTCGTTGTGG TGACGATGCT TGTCTCGCCG GTTGGGGGGT TGCTGGTCGC CCTGGGGCGG
ATTTCCACCT TCCCGCCACT GATAGGATTG TGCTGGTTTT TTATCTGGAT CTTTCGCGGC
ACTCCCCTGC TTTTGCAACT CTTTTTCATC TACTACGGCC TGCCGTCGAT GGGGGTCACC
CTGTCGCCGC TGGTCGCGGC CCTGCTCGGA CTGGGACTCA ACTATTCGGC CTACCTGGCC
GAGATCATCC GCGGCGCCAT CCAATCTATT GATTCCGGGC AAATGGAAGC GGCCAAGGCC
CTGGGGATGA CCTACGGCCA GGCCATGCGC CGGGTGATCA TTCCCCAGAC CTACAAGCGG
CTCATGCCTC CGGTCGGCAA TGAATTTATC GCCCTTATCA AGGATACGGC CCTGGTTTCG
ACCATTGCCA TGGTCGAACT CATGCGCGCG GCAGACCAAT TGTTCAATAC CTATTTTGAC
ATTACTGTTT TGGTCCTGGC GGCGATTATC TATCTCCTGT TCACCTCGGC ATTCACCGTG
ACCTTTGAAA AAATCGAAAA GCGCGTGGGC GCCTATGAAA ACAGATACAC CCCCTCCCAC
TAA
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| Protein sequence | MIASTPSCTT PTAKSRALVA LLFAFACLSL LNPVSGWTQN GQTPQDPTAI FREGSNAMAL
GKLDKAVQLF KTIPRPESGE SGKLFVQSRM QLARVYYAQE DLDKAAAACR EILAVYPDNA
EATNFLASVE KAQKPWYIQF WQDTVRFTPA LAKGAVMTFV LVVVTMLVSP VGGLLVALGR
ISTFPPLIGL CWFFIWIFRG TPLLLQLFFI YYGLPSMGVT LSPLVAALLG LGLNYSAYLA
EIIRGAIQSI DSGQMEAAKA LGMTYGQAMR RVIIPQTYKR LMPPVGNEFI ALIKDTALVS
TIAMVELMRA ADQLFNTYFD ITVLVLAAII YLLFTSAFTV TFEKIEKRVG AYENRYTPSH
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