| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dret_1197 |
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| Symbol | |
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| ID | 8419025 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfohalobium retbaense DSM 5692 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013223 |
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| Strand | + |
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| Start bp | 1407961 |
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| End bp | 1409334 |
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| Gene Length | 1374 bp |
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| Protein Length | 457 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 645037772 |
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| Product | diguanylate cyclase with PAS/PAC sensor |
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| Protein accession | YP_003198063 |
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| Protein GI | 258405321 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAAAGA GTGCAAGCAA TTCAGTATCC TTACAAATCA GTGAATTGGA AGCTGAAAAC
GCGCGATTAC GGGCTGAGCT GGCAATCGCG CGCGACGAAC TGGAGACCAT CTTCGATCAC
AGCATGATGG GCGTGGCCCT TGTCGACCAC AACCGGAAGA TCCTCACGAC CAATCAGCGA
TTTCTGGACA TCCTCGGCTA CACCTCTCTG CACGAAATTC TCGGCCAGCA GACTCACAAG
CTGCATGTTT CCCATAAGGA TTTCGAAGGA TTTGGGGAGC ACTACGATAC GACCCTGCGC
CATAGCGGCG TTGTGCACGT GGCGACCCCG ATGCGGCGCA AAGATGGGTC CGAGATCTGG
CTGGATCTCG TGGGCAGGGC GATAGACCGC ACGACGCCAC CGGATCTGAG CAAAGGCGTG
TTATGGATGG CCTACGATCT GACGGATATC CGTCAGGCGT ATCAGCAACT CAGGGAGGCC
AATGCCGAAC TGGAAGGATT CTTCGCAAAC TGCATGATTG GTATTATCAT CCTGCGCGGG
GGACGCCGTA TCCGCCGGGT CAACCAGCGT TTGGCCGACA TCCTCGGTGA TAAGCCTCCA
GAATGGTACC AAGGGAAATG CGTCAGCGAG TTCCATGTCT CTCAGGAGAA ATTCGAAGAA
TTCGGTCGCC TCTTTTATAA TTCGTTGGTT TTGCGCGACC ACAGTCAGGT GGAATTTGAA
CTCAGGCGAG TGGATGGCTC CCCCGTCTGG GTGAGCGTGT CCGGCAAGGC CCTGGATGAC
GCCACACCCC CGGATCTGGA CAAGGGGGTC ATTTGGATGG TCGATGATAT TTCGACCCGG
AAGGAGGCTG AGGAACAGCT GGCCCGGATC GCGACGACCG ATTCATTGAC CAATGTCAGC
ACCCGGCAGC ATTTCATGGA ATTGGCAAAC AGGGCCTTGG CGCAGCATCT CAGAAATTCC
CGGCCGCTGA CCGTTTGTAT GCTGGATATC GATCATTTCA AACAAATCAA TGACACCTAT
GGGCATGGAA CGGGCGACCG AGCCTTGGCC TGGTTTGCAG AAACAGTCTC CGGAGAATTG
CGGGCCACAG ACATCATCGG CCGATTTGGC GGAGAAGAGT TTTGCATTGT CTTGCCGGAA
ACGGACCAGG ATGAGGCGCA GCAGGTGGCG CACCGTATCA GGACCGCTGT GACGGGCGGG
TCGTCCGCGG CTGCGTCGCC GATCCCGCCG ATAACCGTGA GCATCGGGAT TGCCCTGGCA
GATACCCCTG CGTCCATGGA AGCCGTCATT CAACTCGCGG ACCGAGCTTT GTATGCGGCC
AAAGCCAAGG GACGGAATCG GGCGGAGATT GATGAGACAA TGGTGAGGGG GTAG
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| Protein sequence | MKKSASNSVS LQISELEAEN ARLRAELAIA RDELETIFDH SMMGVALVDH NRKILTTNQR
FLDILGYTSL HEILGQQTHK LHVSHKDFEG FGEHYDTTLR HSGVVHVATP MRRKDGSEIW
LDLVGRAIDR TTPPDLSKGV LWMAYDLTDI RQAYQQLREA NAELEGFFAN CMIGIIILRG
GRRIRRVNQR LADILGDKPP EWYQGKCVSE FHVSQEKFEE FGRLFYNSLV LRDHSQVEFE
LRRVDGSPVW VSVSGKALDD ATPPDLDKGV IWMVDDISTR KEAEEQLARI ATTDSLTNVS
TRQHFMELAN RALAQHLRNS RPLTVCMLDI DHFKQINDTY GHGTGDRALA WFAETVSGEL
RATDIIGRFG GEEFCIVLPE TDQDEAQQVA HRIRTAVTGG SSAAASPIPP ITVSIGIALA
DTPASMEAVI QLADRALYAA KAKGRNRAEI DETMVRG
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