| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dret_1184 |
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| Symbol | |
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| ID | 8419012 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfohalobium retbaense DSM 5692 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013223 |
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| Strand | - |
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| Start bp | 1391604 |
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| End bp | 1393820 |
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| Gene Length | 2217 bp |
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| Protein Length | 738 aa |
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| Translation table | 11 |
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| GC content | 35% |
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| IMG OID | 645037759 |
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| Product | response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_003198050 |
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| Protein GI | 258405308 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTAGCT CTGTGAACAA GTTGGAAAGT CTATACTATA AAGAACAAAG CCAGAAATTC
ATCCCGAGAG ATGACGATCT ACGATCTCCC TCCGTCTTAA TTGTAGAAGA TGACCCTATG
ATGCGGCGGA GCCTTTCTGA GCTGTTACAG TCGCAAAAAT TTTCAGTCAT TGAGGCTTCT
ACCAATAAGG AAGCCAAAAA TTGTTTATCA GAAAACTATT TTAACATTGT TCTTGTCGAT
CTGAACCTTC CAGATGATAG TGGTAAAAAT TTAATTGATT ATATCAATAA AAAAAATATA
AACATACACA TCATAGTCGT AAGTGGAGAA GCAAATTTTG AAAACGCAAC ACATGCCTTA
CAAAGAAATG TTTATGATTT CATAAAAAAA CCTTTCAATG TTACTCATCT TTTGAAAACA
GTTAAAGAAG CTTCAAAAAG TTATCAAAAA ATATCCCAAA TAGCAGATTT TTATAAAAAA
GAAATTTTTT CAAAAGAAAT AAGCAGCTTT ATCATCGAAA ATTCCCCAGA CTTCATTTAC
TTGTTAGATG ATTCTGGTTT TTTTACCTAT GTCAATAGAA AAGCCTATGA GCTTCTCAAT
TATCACAATG GAGAATTGTT AGGTTTACAC TACTCCTCAA TTATTTATGA GGGAGATCTA
CATAAAGCTC AATATGTTTT TAATGAAAGG CGCACTGGTG AGCGCGCGAC GCAAGGAGTT
GAAATACGGC TCAAGAAGTT CTCTGAAAAC ACATTAGATA ATGAAACTCC ACATTTTATA
TATACCGAGT TGTTTGCCCG GGGTATGTAT AGAGATGATA GCGTCAGAAG GCAAAATTTT
GTAGGAACGT ATGGAGTGAT TCGAGACCTT ACTGAGAGAA TACGATCTGA AGATTTGATC
AGGTTTCACT TGTATCACGA TAGTTTAACA TCTTTGCCGA ATAGGACACT TTTCAATGAC
AGGCTGCATA TGGCTCTGTT GCACGCGAAA CGAAATAAGA AAAAGTTTTC ATTACTTTTT
TTAGATTTAG ATAACTTCAA AAAAATTAAT GACAATTTGG GCCATCAGTC CGGAGATGAA
GTTCTCCAAA ATGTTGCTAA AATTCTGAAA AAAAGCGTAC GAGAGTCTGA CACCATATCA
AGAATCGGTG GCGATGAATT TGTAATCCTT ATAGAAAATT TAGATAAGTT AAGTGAAACA
GATAAGATCT GCTATAAGAT ATTAAATGCT TTTAAAGAAC CAATGTACTG CCAAGATCAA
GAAGTACGTA TTACTGCAAG CATTGGCATT GCTGTTTATC CAGAACATGG TCAGACTAAA
GAGCAATTGA TGCGGCGTGC CGACATGGCT ATGTATAAAA TTAAAAGCAA AACACAAAAC
AGTTTTTGCT ACTATAGCAA TAAAGACAAT GGAAGTTGTT ATAAAAATCT GCCAAGTATA
GAGCTCGAAA ACGATCTCTA TATGGCGATA GAAAATAATG AACTGGCCAT GTTTTACCAG
CCTCAAGTTG ATTGCGAGAA CGAAACAATT GTGGGTTTTG AAGCATTAAT GCGTTGGTTC
CATCCCAAAT TTGGGCTCGT TTCTCCTAGC GTATTCATAG CAATCGCAGA AAAAAATGGC
TTGATCAATG AATTAGGAAG ATGGGGACTG CAACAAACGT GTAAAGATGC ATTGTATTTT
GAAGAAAAAT GCGCAGAGCC AATGAAATTT TCTTTTAATA TTTCAGCAAA GCAAATTCAT
CAATCAAATT TTATTGATGA AACTTTGAGC ATTGTCAACA GCTTTGACTT AAAAGAAAAT
TCGATTGAGC TTGAAATTAC TGAAAGTAGC GTTATGCATA ACCTGAATGC AGTTTCGTAC
TTTTTGATGG AATTACGAAA ATCAAACATA TCTATTGCTA TCGATGATTT CGGCTCTGGC
TTTTCTTCAT TAAGTTATCT TCAAAATTTA TTTGTCGACA CACTAAAACT TGATCGTTCG
TTTATTTCAA ATGCTGATTT GAATAAGAAG AAACGCACCA TTTTTACAGC CATCCAGTCG
ATGGCTCATT CACTCAATGT TGATCTTGTA ATTGAGGGAG TTGAGAATTT TTCTCAAAAA
CAATATTTAA AGGATCTTGG CCTGGATTCT ATAATTCAAG GGTATTACTA TTCTAAACCC
ATGTCGTTGG AAGACTTAGA AAAGTCGTTG TTTCTAAAAT ATAGTTTGCA ATTTTGA
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| Protein sequence | MSSSVNKLES LYYKEQSQKF IPRDDDLRSP SVLIVEDDPM MRRSLSELLQ SQKFSVIEAS
TNKEAKNCLS ENYFNIVLVD LNLPDDSGKN LIDYINKKNI NIHIIVVSGE ANFENATHAL
QRNVYDFIKK PFNVTHLLKT VKEASKSYQK ISQIADFYKK EIFSKEISSF IIENSPDFIY
LLDDSGFFTY VNRKAYELLN YHNGELLGLH YSSIIYEGDL HKAQYVFNER RTGERATQGV
EIRLKKFSEN TLDNETPHFI YTELFARGMY RDDSVRRQNF VGTYGVIRDL TERIRSEDLI
RFHLYHDSLT SLPNRTLFND RLHMALLHAK RNKKKFSLLF LDLDNFKKIN DNLGHQSGDE
VLQNVAKILK KSVRESDTIS RIGGDEFVIL IENLDKLSET DKICYKILNA FKEPMYCQDQ
EVRITASIGI AVYPEHGQTK EQLMRRADMA MYKIKSKTQN SFCYYSNKDN GSCYKNLPSI
ELENDLYMAI ENNELAMFYQ PQVDCENETI VGFEALMRWF HPKFGLVSPS VFIAIAEKNG
LINELGRWGL QQTCKDALYF EEKCAEPMKF SFNISAKQIH QSNFIDETLS IVNSFDLKEN
SIELEITESS VMHNLNAVSY FLMELRKSNI SIAIDDFGSG FSSLSYLQNL FVDTLKLDRS
FISNADLNKK KRTIFTAIQS MAHSLNVDLV IEGVENFSQK QYLKDLGLDS IIQGYYYSKP
MSLEDLEKSL FLKYSLQF
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