| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dret_1174 |
|---|
| Symbol | |
|---|
| ID | 8419002 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfohalobium retbaense DSM 5692 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013223 |
|---|
| Strand | + |
|---|
| Start bp | 1378164 |
|---|
| End bp | 1379390 |
|---|
| Gene Length | 1227 bp |
|---|
| Protein Length | 408 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 645037749 |
|---|
| Product | transposase IS204/IS1001/IS1096/IS1165 family protein |
|---|
| Protein accession | YP_003198040 |
|---|
| Protein GI | 258405298 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG3464] Transposase and inactivated derivatives |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.0000815795 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 28 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTCGTGT CCCAGTTAAC CAAATTGACG CTGGATATTC AAGGATTTCG TGTCGGTCGG
GTTCAGGGTG ATACGAGCGG GATCACCGTA GATATAGCCC CAGACCGGCG TCATCTGCTC
TTTTGCAGCC GCTGCGGTAG CGCTGCCAAG TATCGGGATA CCCTTACAAG TCGCTATTTT
CGCCATGTCC CTCTTTGGGG GATCCCTGTA TGGCTCCGGT ACAGCCCCCG CAGAGTTCGG
TGCGGACATT GTGGCGTCAA GGTGGAGTAT TTCCCCTGGA GCACAGGCAA ACATCGGTTC
ACAACGGCTT TTGCCCACTT CCTGGCTTCG TGGGCCCGGT TACTGCCCTG GAAACATGTA
GCACAGCTTT TTGGTTGCTC CTGGGGTACC GTGGCCGCTG CTGTTGACCA GATTGTCGAG
TATGGTCTGG CCCATCAAGA TCTCTCGAAT CTGACGCACA TTGGGATTGA CGAAATCTCC
CGAGAAAAGG GCCAAGTATA CCTAACCAAT GTCTACGACC TGAATACCTC CAGACTCGTA
TGGAGCGGGG AAAAACGGAC AAAGGCAACA ATTACCAACT TCTTCACCTC GCTTGGCCCT
AGCAAGATCG ATAAGCTTGA AGGGGTCTGT TGCGACATGT GGGAGCCGTA TACCCAGGTC
ATTCAAGACA AGGCCCCGAA AGCGACGATG GTCTTCGACA AATTCCACAT TGTCCGGCAT
CTCAATGAAG CCGTTGACCA GGTCCGTAGA GACGAGATCC GGGAGAAGGG CCAAAAGCAC
AAGGATCTGG TTAAAGACAC CCGATATATC TGGCTCAAGA ACCCGTGGAA CCTGACTGAC
AAGCAGGCAT CTCGGTTGAA TGCACTGGAA AAACTCAATC TCAAAATCAA CAGGGCGTAT
TTACTCAAGG AATCATTTCG CCAGTTCTGG TCGTATGAGT GCAGGACTTC AGCCAAAGAT
TTCCTCGACA AGTGGTTCTG GTGGGCGACG CATTCCAGGC TGAAGCCAAT GCGAAATTTT
GCTTGGATGC TGCGCCGCAA AGAAGAAAAT ATTCTCAGTT ATTTCGATAT GCCCATCAGC
AATGGCTCGG TGGAAGGCCT CAACAATAAG GCTAAAGTCA TTAGTCACAG AGCATACGGG
TTCAGGTCGG CCAAGAACTA CATCCGGAAT CTGTACCATT GCATGGGCGG GCTACCTGAA
CCCCAAATTA TGCACAGATT TGTGTGA
|
|---|
| Protein sequence | MLVSQLTKLT LDIQGFRVGR VQGDTSGITV DIAPDRRHLL FCSRCGSAAK YRDTLTSRYF
RHVPLWGIPV WLRYSPRRVR CGHCGVKVEY FPWSTGKHRF TTAFAHFLAS WARLLPWKHV
AQLFGCSWGT VAAAVDQIVE YGLAHQDLSN LTHIGIDEIS REKGQVYLTN VYDLNTSRLV
WSGEKRTKAT ITNFFTSLGP SKIDKLEGVC CDMWEPYTQV IQDKAPKATM VFDKFHIVRH
LNEAVDQVRR DEIREKGQKH KDLVKDTRYI WLKNPWNLTD KQASRLNALE KLNLKINRAY
LLKESFRQFW SYECRTSAKD FLDKWFWWAT HSRLKPMRNF AWMLRRKEEN ILSYFDMPIS
NGSVEGLNNK AKVISHRAYG FRSAKNYIRN LYHCMGGLPE PQIMHRFV
|
|---|
| |