Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dret_1168 |
Symbol | |
ID | 8418996 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Desulfohalobium retbaense DSM 5692 |
Kingdom | Bacteria |
Replicon accession | NC_013223 |
Strand | - |
Start bp | 1372662 |
End bp | 1373549 |
Gene Length | 888 bp |
Protein Length | 295 aa |
Translation table | 11 |
GC content | 54% |
IMG OID | 645037743 |
Product | Flp pilus assembly protein CpaB |
Protein accession | YP_003198034 |
Protein GI | 258405292 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG3745] Flp pilus assembly protein CpaB |
TIGRFAM ID | [TIGR03177] Flp pilus assembly protein CpaB |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.0000250468 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 27 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGGCAGAT TACGAGCTCT GATTCCCATT GCTTTGGCCT TGGTGATTGC CATTGCCGGA AGCGTATTCA TTTACAACTG GATGCAGGAG CAGACCACAC GGCAGGATAC GGTCGAAAAG GCCCGCGAAA AGGCTCCTTC GACTCAGGAG GTGGTTGTGG CTGCATTGGA CATTTCAGCG GGCTCCCAGT TGACCGAAGA AATGCTGCAG ACCGGACAAT ACCTGAAAAA GAATCTCCCC CCCGGCAGCT TTACCGACCC TGATCAATTA CTCGGCCGCG TTGCTCTGGC CCCATTCAAA AAAAACGAAC CCATCGTTGA TCATCGCCTC GCGCCCACCG ATATCAAGTC TGGCGGCGTC TCCGCTCTTA TCTCCAAAGG CAATAGAGCC GTCTCCCTTG GTGGAAATAA AGTTCTCGGT ATCTCAGGAT TTGTCTTGCC CGGCAGTCGG GTTGATGTGA TGGTTACGTG GAATGATCCT GACTCCGGCG AACAGATCAC CAAGCGTATC CTGGACAACG TCAAAATCCT GGCGACAAGC ACCAAAATGC AGGAGACCGA GAGCGGTGGC ACAGCCCCAG TAGATGTCTA CACCCTGGAA GTCACACCGG AAGAAGCTGA AATCCTAACG CACATCCGCA ATCAGGGCAG TCTGCAAATG GCCCTGCGTA ACCCAACGGA CAACGAGCCG GTCATGACCG ATGGCGCTAC CGCGAAGGAT TCCATGGCCT ACATGCTCAA GGAGAATGGG CTTTTGCAAC AGGCCAGAAA CAAGCCTGAT GCTGATTCAG AGCAAAAGGT GGCCAAGGCC CCTACTTCGC CCCCACCGCC ACAACCGACT GTTGTAGAGG TGATCCGAGG CAATAAGCTG GTTGAAATGA ATTTCTAA
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Protein sequence | MGRLRALIPI ALALVIAIAG SVFIYNWMQE QTTRQDTVEK AREKAPSTQE VVVAALDISA GSQLTEEMLQ TGQYLKKNLP PGSFTDPDQL LGRVALAPFK KNEPIVDHRL APTDIKSGGV SALISKGNRA VSLGGNKVLG ISGFVLPGSR VDVMVTWNDP DSGEQITKRI LDNVKILATS TKMQETESGG TAPVDVYTLE VTPEEAEILT HIRNQGSLQM ALRNPTDNEP VMTDGATAKD SMAYMLKENG LLQQARNKPD ADSEQKVAKA PTSPPPPQPT VVEVIRGNKL VEMNF
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