Gene Dret_1165 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDret_1165 
Symbol 
ID8418993 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfohalobium retbaense DSM 5692 
KingdomBacteria 
Replicon accessionNC_013223 
Strand
Start bp1370136 
End bp1370567 
Gene Length432 bp 
Protein Length143 aa 
Translation table11 
GC content38% 
IMG OID645037740 
ProductTadE family protein 
Protein accessionYP_003198031 
Protein GI258405289 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG4961] Flp pilus assembly protein TadG 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value0.0463265 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones28 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCTCAGCA AAATGAAATT TTCAAATCAA CGCGGAGCAG CCGCAGTAGA ATTTGCCATT 
GTACTGCCTC TCCTTGTCTT GATTTTTGCG GGCATTACAG AATTTGGGAT CGCCTATTAT
AACAAGCAGG TAATTACTAA TGCAAGCAGA GAGGGTGCAA GGGTAGGGAT GTCTAACGTT
GATCCTCAAG ACATTCGAAA TATCGTTTAT CCATATGCCA AAGACAGACT GCTCACCTTT
GGCCCAGATA GCTTTTCAAG TGATTCAAGC AGTATAAATA TAAATGGATG CAATTCGACA
TCTGACTATT GCAAGGTAGA GGTTGTTTAT AACTATACTT ATCTAGTACT CCAAGTTTTT
GATTTTTTTG GTGCTAATTT TGATAAAGAT TTAGATATTA AAGCCGCAAC AACAATGAAA
ATGTTACCAT AA
 
Protein sequence
MLSKMKFSNQ RGAAAVEFAI VLPLLVLIFA GITEFGIAYY NKQVITNASR EGARVGMSNV 
DPQDIRNIVY PYAKDRLLTF GPDSFSSDSS SININGCNST SDYCKVEVVY NYTYLVLQVF
DFFGANFDKD LDIKAATTMK MLP