Gene Dret_1159 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDret_1159 
Symbol 
ID8418987 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfohalobium retbaense DSM 5692 
KingdomBacteria 
Replicon accessionNC_013223 
Strand
Start bp1363773 
End bp1364735 
Gene Length963 bp 
Protein Length320 aa 
Translation table11 
GC content53% 
IMG OID645037734 
ProductType II secretion system F domain protein 
Protein accessionYP_003198025 
Protein GI258405283 
COG category[N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG2064] Flp pilus assembly protein TadC 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones30 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones27 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCAGCTG ACTACCTTCC CTTGATCATG GCCGGGGCAA TTTTTGTGTC CCTTTTTCTG 
CTCATGATCG GGGTTATGCA GCTTGTCCGC TCCAACTCCA AAAAGCGGGC CATTCTGGAA
AAAATCCAGA CTTCGAATCA GCAGAGCGCC TTTGGGGACC CGCAGCGCCT GGACTCTTCC
CGATCCGGCT TTTTTGGTAA AATATTCGGC TTTGTAGGTC TTGTTGGCCA AAAGGTGGCC
AAAGACAGAG TCTCTGATCA CACCGTGCTC CGTCCCAGAT TCCTCAAGGC CGGGATCCGG
TCTCCTCTGG CCCCGGCGGT TTTTTGGGGT CTGAAGGTGA TTATGCCACT CGCTCTCCCC
CTCTGCTTCG GTCTTTTTTA TTATTTGATC CCGGATTTGA CCCTTTCTCC AACCAACACG
CTCCTCATCA TCACTGTTTT GGCTGTGGCC GGCTTTTATG TCCCCGACCT GTGGCTGACC
AACAAACGAC AGAAACGGCG GCAGACCATT CTTAAAGGAT TTCCAGACGC CCTGGATCTT
ATGGTGGTTT GCGTTGAGGC AGGCATGGGC CTGGATGCGG CCATCAGCAG AGTGGCCAAG
GAATCAAAAT CCAACAACGC GACTCTCAGT GAAGAACTGC ATTTTTTCAC CCTGGAGACC
AGGGCCGGCA TGCCCCGTAA GGATGCGCTC AAGAATCTGG CCATGCGCAC AGACCTGCAG
CAAATGCAGA ATCTGACCAC CCTGCTCATT CAGACCGAAA AATTCGGCAC CAGTGTGAGC
CAGGCCTTGA AGGTATTTTC CGAAAGCATG CGCACCGAAC GGTTCCAAAG AGCTGAGGAA
AAAGCAGCCA AGATCCCGGT CAAGCTGTTG TTTCCGCTTA TCATGTTCAT TTTTCCCTCG
CTGTTCGTGG CTATTCTGGG GCCGGCGGTG ATTCGCATTT CCCAGACTCT GCTCAATATG
TAG
 
Protein sequence
MPADYLPLIM AGAIFVSLFL LMIGVMQLVR SNSKKRAILE KIQTSNQQSA FGDPQRLDSS 
RSGFFGKIFG FVGLVGQKVA KDRVSDHTVL RPRFLKAGIR SPLAPAVFWG LKVIMPLALP
LCFGLFYYLI PDLTLSPTNT LLIITVLAVA GFYVPDLWLT NKRQKRRQTI LKGFPDALDL
MVVCVEAGMG LDAAISRVAK ESKSNNATLS EELHFFTLET RAGMPRKDAL KNLAMRTDLQ
QMQNLTTLLI QTEKFGTSVS QALKVFSESM RTERFQRAEE KAAKIPVKLL FPLIMFIFPS
LFVAILGPAV IRISQTLLNM