| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dret_1158 |
|---|
| Symbol | |
|---|
| ID | 8418986 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfohalobium retbaense DSM 5692 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013223 |
|---|
| Strand | - |
|---|
| Start bp | 1362746 |
|---|
| End bp | 1363693 |
|---|
| Gene Length | 948 bp |
|---|
| Protein Length | 315 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 645037733 |
|---|
| Product | TPR repeat-containing protein |
|---|
| Protein accession | YP_003198024 |
|---|
| Protein GI | 258405282 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3063] Tfp pilus assembly protein PilF |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 0.804036 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGGTACA GTAACGATAC CGCCAAGACC AATGACGGCG GAAAGGACAC TATGCAACGC
AGGACAATTT CTCCTCTTTT GACAATCCTG GGTGTGCTTC TGCTCTGTGC CGGCCTGACC
TCCTGCACCC ACACCCGGTC TCAGGGCCTT GCAAAATTGG ATAAACCTCA GTCTGAGCTG
AGTAGCCAGG AACATGAACG ACTGGGCGAT GTGCTCATGG CCCAGGAAAA ACTGCAGTTG
GCCCTGCTTC AATACGATGA CTCCCTGAAA AAAGACCCGG CAAATATCGA CGCCAAATAC
AAACGAGGGT TGGTCCTGTT GCAGGGGGGA GACGACAAGG AAGCGTTGCA GGCTTTCCAG
GCGGTCGTAG AGATGGATCC AGAATACGCA AAGGCGTATG AAGGTCTGGG TCGGGTCTAT
GTGCAGATGG AAAAGCGGGA CCAGGCCAGG GCGCAATTTC TAAAAGCTTT AGAGCTGGAT
CCTGAATTGT GGCGAGCCAG AGCCGAATTG GGCCTGATTT ACCACTTTCA GGAGAAGCAT
GAACAAGCCG CAGCGCAATA TACACAGGCC ATTGAACTCA AGCCAGACAA AGGCTCTTTG
TACAACAACC TGGGCGCAAC CTATAACATG TTGAAAAAAT ACGACCTCGC GCTGCAAGCA
TTCCGAAAGG CCCTTGAACT CGGATTTCAG GAACCGAAGG TCTACAATAA TGTAGGACTG
GCCCTGGCTC AGTCCGGCCG GTACAAAGAG GCCCTGCAGG CTTTCCGGCG GGCCGGCTCC
GATGCCCAGG CGTATAACAA TCTTGGCTGC ATGTACTTGA GTCAGGACCG TTATCGCAAA
GCGATCCAAT CGTTTGAAAA GGCTATAGAG CTGGATCCGG CCTACTACCA GACCGCGGGT
GAAAATCTGA AGAAGGCCCG GGGAGCTTGG GAGGAACAAG GTGGGTAG
|
|---|
| Protein sequence | MGYSNDTAKT NDGGKDTMQR RTISPLLTIL GVLLLCAGLT SCTHTRSQGL AKLDKPQSEL
SSQEHERLGD VLMAQEKLQL ALLQYDDSLK KDPANIDAKY KRGLVLLQGG DDKEALQAFQ
AVVEMDPEYA KAYEGLGRVY VQMEKRDQAR AQFLKALELD PELWRARAEL GLIYHFQEKH
EQAAAQYTQA IELKPDKGSL YNNLGATYNM LKKYDLALQA FRKALELGFQ EPKVYNNVGL
ALAQSGRYKE ALQAFRRAGS DAQAYNNLGC MYLSQDRYRK AIQSFEKAIE LDPAYYQTAG
ENLKKARGAW EEQGG
|
|---|
| |