| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dret_1157 |
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| Symbol | |
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| ID | 8418985 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfohalobium retbaense DSM 5692 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013223 |
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| Strand | - |
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| Start bp | 1361058 |
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| End bp | 1362626 |
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| Gene Length | 1569 bp |
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| Protein Length | 522 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 645037732 |
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| Product | TPR repeat-containing protein |
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| Protein accession | YP_003198023 |
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| Protein GI | 258405281 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG5010] Flp pilus assembly protein TadD, contains TPR repeats |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 0.934871 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACGTAC GTTTTCCTTA TCGATTTTCG CTGCTTGCGG AGACATTGGC CATATTGCTT
CTGCTTTTGA CTGCAAGCGG CTGTGCTACC CTGCCCAGCA GTAGCAATGG GGGTTGGTGG
GGGTCGAAGC AGGACCGTGA GGTCATTACG AACGAGGACA TCCGTCAAAA ATTGTGCACT
CCTCGCCCCT TGAGCCGAGG TCCGGGTTTT CATTTCGACC AGGGGGTGGC CTTTCAGGGC
CAAGGCGAGC ACAGACTGGC CATTAGGGAG TTCAACAAGG TCCTCAATCA GGAGCCAGAG
CACATCAAGG CCTTGAACGC CAAGGGTGTC TGCCTGGACA GGCTGGGACG GTTCGAACAG
TCTATAGCTT CCTACCAGGC CGCATTGGAG CTGAACCCCA AGCTGGCCTA TATACACAAC
AACCTCGGTT TTTCCTATTA TCTGCAGGGG AAATACAGAA AAGCCGTTGA GGCTTATAAA
AAGGCAATAT CCTTAAACGG CAACAAAAGC GTCTATAACC ATAACCTGGG GCTGGCCTAT
GCCCAAATGG GCAATTTCGA CCAGGCTTTG GCCCAATTTC GAACAGGTGG GCCTTCAGAA
CCTGAAAATA CAACTCGCAA AACATCAGCC ACTGCCCCTG CCGCTGACAA AGACGAAGCT
CTTTTTCAGG CCCGTGTCTC TGAACAAGAG AGAGGGCAAA GCGATATTTC GAAGCACGTA
GCGACAACAA CCGAAGCTCA CACCGGGCAG ACCCAAACGC CAATACGTCC GGCAACAGAG
CCAACACCGA GTGGCCAGAC GGATCTGTCA TCAGGACAGA CAAGCGATGC TTTGGAGATG
CGGATGAACA CTGATGCCGC GACTGACTCT GTCCCGCACA GCCCGGAAGT CATCGCCCAA
TCACCTCACC AGCAAGAGCA GCAGAAAGAG GTCAGGCCTG ATTTTGCTGT CCAGGCCGGG
GCATTCACCT ACCAACGGCA TGCGGCTGAG CTCTATTTTC AACTTCAAGA AAGGGGCTAT
GACGCCTATA TCAAAAAATC GGCAGCCAAT GGGCTCTATC TGGTCCGAGT AGGAGAGTAT
TCCGGTCATA AAGAAGCCAA GATAGCAGCC CGGAGCCTCT CCCGAGTTGA AGATGTTGAG
ACCCTGGCCA CCAAGGAGAT AGACCCCTGC GCTCGGACAA CAATCACTGC TGCGGCCAAG
TTCGAAGCAG TAGTCGTGAA CCAGAAGGAC ACGCTACTTC AGCAGCCGGT TCTGGCAGTC
CTTAACGGCA ATGGGGTCAG ACACATGGCC AGACAGACTG GCCAGTACCT CCAGGACCAG
GGGTATAGCA TAGGCAGGAT TGGCAACGCT TCGCATTTCA ACCACACGCG GACCACCATA
TACTACAGTC CGGAAATGAT CCCCGAAGCC CAGTCCCTGG CCGCGCGTCT TCCTGAAAAA
TGCAAGCTCA AACCAGCTCA CCCCTTGGCC ATGCCCACAC CCAGCCTGCG GATAATCGTG
GGCCTGGATC TGGTCGCCCA CAAGAAACAC CTGTTAAACC CGACAGTGGC TTTAAATACT
GAACTGTGA
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| Protein sequence | MNVRFPYRFS LLAETLAILL LLLTASGCAT LPSSSNGGWW GSKQDREVIT NEDIRQKLCT
PRPLSRGPGF HFDQGVAFQG QGEHRLAIRE FNKVLNQEPE HIKALNAKGV CLDRLGRFEQ
SIASYQAALE LNPKLAYIHN NLGFSYYLQG KYRKAVEAYK KAISLNGNKS VYNHNLGLAY
AQMGNFDQAL AQFRTGGPSE PENTTRKTSA TAPAADKDEA LFQARVSEQE RGQSDISKHV
ATTTEAHTGQ TQTPIRPATE PTPSGQTDLS SGQTSDALEM RMNTDAATDS VPHSPEVIAQ
SPHQQEQQKE VRPDFAVQAG AFTYQRHAAE LYFQLQERGY DAYIKKSAAN GLYLVRVGEY
SGHKEAKIAA RSLSRVEDVE TLATKEIDPC ARTTITAAAK FEAVVVNQKD TLLQQPVLAV
LNGNGVRHMA RQTGQYLQDQ GYSIGRIGNA SHFNHTRTTI YYSPEMIPEA QSLAARLPEK
CKLKPAHPLA MPTPSLRIIV GLDLVAHKKH LLNPTVALNT EL
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