Gene Dret_1136 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDret_1136 
Symbol 
ID8418963 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfohalobium retbaense DSM 5692 
KingdomBacteria 
Replicon accessionNC_013223 
Strand
Start bp1332472 
End bp1333332 
Gene Length861 bp 
Protein Length286 aa 
Translation table11 
GC content62% 
IMG OID645037710 
Productinner-membrane translocator 
Protein accessionYP_003198002 
Protein GI258405260 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0559] Branched-chain amino acid ABC-type transport system, permease components 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value0.0602243 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones27 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATCTGGC AGCAAATCGT GAACGGAATC GTGGCCGGGT CGGCCTACGC CCTGGTCGCC 
CTGGGCTATT CCCTGATCTA CGGGGTGTTG GGGCTGATCA ACCTGGCTCA GGGCGAAATC
TATATGGCCG GGGCCTTCGG CCTCTGGATA GCGGCCGCGG TCCTCGGCCT ACCGTTGCCC
CTGGCCGTGC TCTTTGGCCT GCTGTTCTCG GCAGTGGTCG GATTGAGCAT GGAGCGGGTG
GTGTTCCGGC CGCTGACAGG ACGTCATCCA CTGATCCCCT TGTTGGCTGC CATCGGTTTG
TCCATTTTTC TTCAGTCCGT TGCCTTGCTG GCCTTTGGCC CGGAAACCCG TCCCTTTCCT
CTGGAATTCG AGCCGCAGCT CTGGAATCTG GGGCCAGTCA CCCTCTCCAC GCTGCAGTTG
CTGCTGGTCA CAACTGCACT CGCGCTGATG GGCGGACTGT TCTGGTATGT CCATGCCAGC
CGCCACGGTC AGGCCTTGCA GGCCGTGGCC ATGGACCGTG AAGCCGCGCG GCTCGTGGGC
ATCAAACCCC ATCAATGCGT GGCCCAGGCA TTCGGCATCG GCGGCATGCT CAGCGGAGCC
GCGGGGATGA TGATGGCGGC CTATTACAAC GCCACCTACC CCTACATGGG AGTGCTGCCG
GGACTGAAAG GGTTTTGCGC CGCCGTGCTC GGCGGAGCGG GATCGATCCC CGGGGCCATT
CTCGGGGGAC TTATTCTGGG CCTTTCCGAA AACCTCGGTG CCGCCTACAT CCACTCCGGG
TTCAAGGACG GCTACGCGTT CGCTATTTTG ATCGCCATCC TGCTTTTGCG CCCCCAGGGG
CTCTTGGGCA AATCCAAATA A
 
Protein sequence
MIWQQIVNGI VAGSAYALVA LGYSLIYGVL GLINLAQGEI YMAGAFGLWI AAAVLGLPLP 
LAVLFGLLFS AVVGLSMERV VFRPLTGRHP LIPLLAAIGL SIFLQSVALL AFGPETRPFP
LEFEPQLWNL GPVTLSTLQL LLVTTALALM GGLFWYVHAS RHGQALQAVA MDREAARLVG
IKPHQCVAQA FGIGGMLSGA AGMMMAAYYN ATYPYMGVLP GLKGFCAAVL GGAGSIPGAI
LGGLILGLSE NLGAAYIHSG FKDGYAFAIL IAILLLRPQG LLGKSK