| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dret_1125 |
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| Symbol | |
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| ID | 8418952 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfohalobium retbaense DSM 5692 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013223 |
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| Strand | + |
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| Start bp | 1318531 |
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| End bp | 1320840 |
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| Gene Length | 2310 bp |
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| Protein Length | 769 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 645037699 |
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| Product | diguanylate cyclase with PAS/PAC sensor |
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| Protein accession | YP_003197991 |
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| Protein GI | 258405249 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.586946 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGACATCAC GCAGTTTGCG CCTCGTCTTA ACCCGATTGT TCGTTCAGCG ACTTTATGTC
CCCTGCCTTA TCGTTCTGGT CCTGGGGTCG ACTGTTCTGG GCTGGGGACA GTTTCGGGAA
CTGCGCCACC ATCAGCAGGA AACTGTTGAC GGCGTGGCCC GGGCGTTTAC ACTGCAGTTG
GAATCTACCG GCCGATTTTT GACGCAATTC GGGCTGACGG CGGAGACGAC GTCGGAGTTG
CAGCAAACGC TTCGCGCTGT GGTGGAAAAT TCCTCGCTGT TTGAGCGTTT CATGGTTCTG
GATCCGAATG GATCGGCAAT TCTCCATGTG GACGCCCCCT CTTCCTCCTT GCCAGCCTTC
TCTCCGGAGA CCTTTGCCGC ACGTGCTGAA CAGCAGATGC TCTTCGGCCC CTTGGGCCGC
GATGGGGATA CGGCCTCTTC CATGTGGGCC ATCGTGCGCA GCAGACCGCA AGGCAGCACG
ATTGTCGGCA TTATGAGCCA GAGATCCCTG GCGCGTCTGT TTCGCACTGT GGCGGGGGAT
CACCACAACC AATGTCTGTT CCTCTCTGAA TTTCAGGGCG ACATGATTTT CGCCACGGAC
CAGGCCCCAC CGAGTTGTGC CACCAATTGG GAGCAAACCG ACCTCCTGCA CCAAGCCATC
CAGGCTGGTT CGAACCCGGT TTCCGGATTT GTCTCCTTTG ACAACGAAAT CACCTACACC
AGTGCCCGGG CCGTGCCCCG GGCCGGGCTT GTTGTCGGGG CCAGCCGCGA CGCCGCTGAA
TTTATTATTC CTTTGGTGAT CCTGTGTTTT GTGATCGCCT TGATCTTCAG TTGCTTTTTC
GGTCTCGTCG TTTGGCGGTT GCGGCGGCGG ATCCAGAGTC AAGTGGTGGA TCCCCTCCAC
GATTTCACCG ACGAGATGCG CTCTTTGGAG CAGGGCAGGG TAGTCTGCGA GAACAGCAGA
CAGCCGTTTC AGGAAATGGA GGTCTTGCGC TGTCGATTTA TGGAGATGGC CCATACCCTG
AATACCCGGG AACAGGAACT GCGCGAGAGT CAGGAACGGT TGAACCTCAC GGTCAATAGC
GCCGGGTTGG GGTTGTGGGA TTGGAATCTG CGCCAGGGGA CAATTTTTTC CAGTTCCCGG
TGTTCGGAGA TCCTGGACTT TCCCCCCTAC GAAGCCACGA CCCGGATCAC GCAGTGGTCC
AGGCGGATCC ATCCCCGGGA CCGGGAGGAG GTCAAGCGGC GATTGCGGGC GCATCTGCTG
GGCCAGGAGG ACACCTTTGA GACCGAATTC CAGATTCAAA CCCGGGACAA CATTTGGCGC
TGGGTTTGGG TCTGCGGAAG GATTGTGGAG AGCGACGCTC AAGACCGTCC CCTGCGGATG
ACAGGAACCG CCCTGGATAT CGCCAAGCGC AAGACGGTTG AAGAGAAATT GCGCACCCTG
ACCCTGGCCG TGGCCCAGAA TCCGGTGCCG ATCCTCATCA CCGACGAGGT GGGACGATTG
GAGTATGCCA ACCCGGCATA TCTGGAGTTG ACCGAATTGA CGACCAATGA AGTCCGAGCC
GGGCTGGAGG CCAAAGCGGG GCCGCACTTC ATTGACGGCA GTTTCATCCG CCATTTCCAT
CAGGTTTTGT TCAGCAAGGG CCATTGGCAA GGGGAGTTGC AGAATGTGAC CAAAAGCGGA
CGGGTATTCT GGGAATTTAC CTCCATCTCG CCGCTCCAAA ACGAAAAAGG CGAGGTCACC
CACTATGTGG CCGTGCGCAA GGAAGTCACC GCCCAGAAGC AGGCCGAATC CAAACTCCGG
GAATTGGCCA CCCGCGACAG CCTGACCGGG GTCTGGAACC GGCGCTATTT CTTTGAGTTG
GCCGCCCGGG AGCTTGAAAG CGCCCAGCGT TACAAACATC CTTTGTCATT GATTCTCTAT
GATATTGACC ACTTCAAACG TATAAACGAC ACCTATGGCC ACATGATCGG CGACGAAGTC
CTGCGTCAGC TGACCCAACT CGTCGGGGCC AACCTCCGCA ATGTCGATCT GCTGGCCCGG
GTCGGCGGCG AAGAATTCGC CGTGTTGTTG CCGCACACCT ATCTCGAACA GGCCCACACC
GTGGCCCGGA GGATTCTGCG GGGGGTCAAC GAGGCGGTGA TCCGGACCGA GGCCGGGCCG
TTGCAGCTCA CGATCAGCAT CGGTATGAGT TCCTCAGCCC ATGCCGACAA TTGTCTGGAA
TCGTTGATCC ATGACGCCGA TCAGGCCTTG TATGCGGCCA AGAACAAGGG GCGCAACAGT
ATTTGTGGTC CAATGATCGG CATGGAGTGA
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| Protein sequence | MTSRSLRLVL TRLFVQRLYV PCLIVLVLGS TVLGWGQFRE LRHHQQETVD GVARAFTLQL
ESTGRFLTQF GLTAETTSEL QQTLRAVVEN SSLFERFMVL DPNGSAILHV DAPSSSLPAF
SPETFAARAE QQMLFGPLGR DGDTASSMWA IVRSRPQGST IVGIMSQRSL ARLFRTVAGD
HHNQCLFLSE FQGDMIFATD QAPPSCATNW EQTDLLHQAI QAGSNPVSGF VSFDNEITYT
SARAVPRAGL VVGASRDAAE FIIPLVILCF VIALIFSCFF GLVVWRLRRR IQSQVVDPLH
DFTDEMRSLE QGRVVCENSR QPFQEMEVLR CRFMEMAHTL NTREQELRES QERLNLTVNS
AGLGLWDWNL RQGTIFSSSR CSEILDFPPY EATTRITQWS RRIHPRDREE VKRRLRAHLL
GQEDTFETEF QIQTRDNIWR WVWVCGRIVE SDAQDRPLRM TGTALDIAKR KTVEEKLRTL
TLAVAQNPVP ILITDEVGRL EYANPAYLEL TELTTNEVRA GLEAKAGPHF IDGSFIRHFH
QVLFSKGHWQ GELQNVTKSG RVFWEFTSIS PLQNEKGEVT HYVAVRKEVT AQKQAESKLR
ELATRDSLTG VWNRRYFFEL AARELESAQR YKHPLSLILY DIDHFKRIND TYGHMIGDEV
LRQLTQLVGA NLRNVDLLAR VGGEEFAVLL PHTYLEQAHT VARRILRGVN EAVIRTEAGP
LQLTISIGMS SSAHADNCLE SLIHDADQAL YAAKNKGRNS ICGPMIGME
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