| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dret_1104 |
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| Symbol | |
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| ID | 8418929 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfohalobium retbaense DSM 5692 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013223 |
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| Strand | + |
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| Start bp | 1295864 |
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| End bp | 1297069 |
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| Gene Length | 1206 bp |
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| Protein Length | 401 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 645037676 |
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| Product | Type II secretion system F domain protein |
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| Protein accession | YP_003197970 |
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| Protein GI | 258405228 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1459] Type II secretory pathway, component PulF |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.250932 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.00579509 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | ATGCCGATTT TCATCTACAA GGCGATCAAA GGGAAACGAC GGGTCAAAGG CGATCTGGAC
GCGGCCAATC TGGAAATGGC GGAAGCCGCA TTGCGGCGTC GTGGCATGAC CAACATCCGG
GTCAAGCCCA AGCCGAAAGA TCTGCTTGAA GGGACCTTTC TGGAAGGCCG GGTCAAAGAC
CGGGATATGG TCATCTTCTC CCGGCAATTC GCGACCATGA TCGATTCCGG AGTGCCCATC
CTGCAGGCGT TGCAGGTCAT GTGCGAGCAG ACGGAAAATG ACAAGCTCCG GCGCAAGCTC
TACGAAGTGC GCAACGACAT CGAGGGCGGG AGTTCCTTGT ACGAGGCCTT GCGCAAGCAC
CCGGATGTTT TTGACGATCT GTACACAAAC ATGGTCAATG CCGGGGAAAC CGGCGGCGTT
TTGGACGTGA TCCTGGATCG CTTGGCGACA TATATCGAAA AGGCGGCCAA TCTGAAATCG
AAGGTCAGGG CCGCGCTCAT TTATCCAGGA GTTGTCTCCT TTGTGGCCGT CGCAGTCATC
GCCATCATCC TGATCTTTGT CATCCCGACC TTCGAGCAAC TTTTCAATGA TTTCGGGAGC
GGCCTGCCCA CGCCGACCAA ACTGGTGATC GGATTGAGCC GTTGGGTCAA GGGCAATCTC
CTCTGGTTGA TCCTGGGGTT GGTGGCGGCG CTAATCGCCT TCCGGTTTTT TTACCGCTGG
GAACGAGGCC GGACCATGGT GGACCGCTTC TTCCTCACGG TGCCGGTCTT CGGTCCCTTG
ATGCGAAAAT TTGCCGTGGC CCGTTTCAGC CGTACCTTCA GCACTATGGT TTCCAGCGGG
GTTCCGATCC TGCAAGCCTT GGACATTGTG GCCAGGACCT CTGGCAACAA GATTGTCGAG
TCCGGGGTGA ATGAAGCGCG TACGTCCATT GCTGAAGGGC AAACCCTGGC CGATCCCCTT
GATGCCACCG GGGTTTTCCC GCCCATGGTC ATCCACATGA TCTCCATTGG CGAAACCACA
GGGTCACTGG ACACCATGCT CGGCAAAATC GCCGATTTCT ATGATGACGA GGTCGATGTG
GCGGTGACGA CCCTGACCTC GTTAATCGAA CCCATCCTGA TTGTCTTTTT AGGGGTCATT
GTCGGTGGCC TCGTGGTCAG CATGTACCTG CCCATTTTCA AGATCGCCGG GACTGTGGCC
GGATAG
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| Protein sequence | MPIFIYKAIK GKRRVKGDLD AANLEMAEAA LRRRGMTNIR VKPKPKDLLE GTFLEGRVKD
RDMVIFSRQF ATMIDSGVPI LQALQVMCEQ TENDKLRRKL YEVRNDIEGG SSLYEALRKH
PDVFDDLYTN MVNAGETGGV LDVILDRLAT YIEKAANLKS KVRAALIYPG VVSFVAVAVI
AIILIFVIPT FEQLFNDFGS GLPTPTKLVI GLSRWVKGNL LWLILGLVAA LIAFRFFYRW
ERGRTMVDRF FLTVPVFGPL MRKFAVARFS RTFSTMVSSG VPILQALDIV ARTSGNKIVE
SGVNEARTSI AEGQTLADPL DATGVFPPMV IHMISIGETT GSLDTMLGKI ADFYDDEVDV
AVTTLTSLIE PILIVFLGVI VGGLVVSMYL PIFKIAGTVA G
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