| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dret_1103 |
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| Symbol | |
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| ID | 8418928 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfohalobium retbaense DSM 5692 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013223 |
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| Strand | + |
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| Start bp | 1294039 |
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| End bp | 1295754 |
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| Gene Length | 1716 bp |
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| Protein Length | 571 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 645037675 |
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| Product | type IV-A pilus assembly ATPase PilB |
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| Protein accession | YP_003197969 |
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| Protein GI | 258405227 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2804] Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB |
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| TIGRFAM ID | [TIGR02538] type IV-A pilus assembly ATPase PilB |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.202418 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.00743342 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | ATGGCCAAGC AGACGACCAC CGAGGCCCTG AAACAATGGG CCCAATTCAC TGCAGAAGAA
ATCAGGGACA TAGAAGAACT CCAGCGTCAG AAGCGGACCA GCTTTCTTGC GGCGGCGTTC
GATAAAGATA TCCTCAGGGA CCAGGACTAT CTGGAATTTC TTTCCCAACG TCTGTCCATG
CCGTGCGCTG CGCCGGAACT TTTTGATATC GCTCAGGATA TCTTTGAACT TGTGCCTTCA
GAGTTGTGCC GCAAGTACGA GGCGGTCCCG TTCTTCCGCC ACAACAACAC CCTGTTCATC
GCCACCGCCG ACCCGGAAAA TCTCCTCGCC CTTGACGACA TCCGTTTTGT GACCGGCATG
GAACTCGCCG TGCACATCGC CACGCCCACG AGCATCGCTG TCAGTCTGGA GAACTATCTT
AAAGGCGAAG AGTCTGGCGG GAATTTTGGC GATTTGGACG AGGCCCTGGC CGACATTGCC
GAGTCCGATG TTGAAATTTC GCGCAAGAGC GAGGAATCCG CTTCGGAAGA ACCTTCGGTG
CTCGAGGCCG CTTCTCAGGC TCCTGTGGTC AAGATGGTCA ACCTGATCAT CATGGACGCC
ATCCGCAAGA AGGCGTCGGA TATCCATATT GAACCCTATG AAGAACTTTT CCGAGTCCGT
TTTCGTATCG ACGGTGTCCT GCAGGAGGTC ATGCGGCCGC CGATGCGCTT GCGCAATGCG
ATCATCTCCC GTTTGAAAAT CATGTCCCAC ATGGATATCG CCGAACGGCG ACTGCCCCAG
GATGGCCGGG TCAAGGTCCG GACCCCCGGA GGGTTGGAGG TCGAATTCCG GGTTTCGGTC
TTGCCTCTTT TGTACGGGGA AAAGGTGGTC ATGCGCCTGT TGGACAAGAG TTCGCTCAAT
CTTGACCTGC GGGATCTGGG GTTGGAAGAC AGCGCCTTGG AGATCCTCCA GCGCGCCATC
ATCAAACCGT ACGGAATGAT ACTGGTTACC GGCCCAACAG GCAGCGGAAA GACGACCACC
TTGTATTCGG CGATCATGGA ACTCAACAAG CAGGAAGTGA ATATCGCCAC TGCCGAAGAC
CCGGTGGAGT ATAGTCTGGA AGGGGTCAAC CAGGTCCAGG TCCGCGATGA TATCGGCTTG
ACATTTGCCG GGGCCTTGCG CTCCTTTTTG CGTCAGGATC CGGACATTAT TCTTGTGGGT
GAGATCCGGG ATCTGGAAAC CGCCGAAATC GCCGTCAAAG CGGCTATGAC CGGCCACCTT
GTTCTTTCCA CCCTGCACAC CAATGACGCG CCACGGACTT TGACGCGCCT GATGAACATG
GGGGTCGAAG AATATCTGAT CGCTTCGTCG GTCAATGCCA TTGTTGCCCA GCGTCTGGTG
CGCAAACTCT GCCCCTTTTG CAAACAGGAC ACCGAGCTTT CGCAACCGGT CCTGGACGCC
CTGGGCATTG ATCCCGCCAC CTGGGACGAC AGCCAGGTCT GTGCCCCGCG TGGATGCCCG
AAATGCAACA ATACCGGGTA CAAGGGGCGC ATCGGTCTGT ACGAGGTCCT TGAAGTTACT
GAAACTATGC AGGAATTGAT CCTGCAGCGC GCCAGTGTCC CCCATATTCA CGCCCTGGCC
ATAGAAGAGG GGATGTTGAC CATGCGTCAA AGCGGTATCG AAAAAATCCG CCAGGGAATC
ACTTCGGCCC AGGAAGTGCT CAAAGTAACG GCGTAA
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| Protein sequence | MAKQTTTEAL KQWAQFTAEE IRDIEELQRQ KRTSFLAAAF DKDILRDQDY LEFLSQRLSM
PCAAPELFDI AQDIFELVPS ELCRKYEAVP FFRHNNTLFI ATADPENLLA LDDIRFVTGM
ELAVHIATPT SIAVSLENYL KGEESGGNFG DLDEALADIA ESDVEISRKS EESASEEPSV
LEAASQAPVV KMVNLIIMDA IRKKASDIHI EPYEELFRVR FRIDGVLQEV MRPPMRLRNA
IISRLKIMSH MDIAERRLPQ DGRVKVRTPG GLEVEFRVSV LPLLYGEKVV MRLLDKSSLN
LDLRDLGLED SALEILQRAI IKPYGMILVT GPTGSGKTTT LYSAIMELNK QEVNIATAED
PVEYSLEGVN QVQVRDDIGL TFAGALRSFL RQDPDIILVG EIRDLETAEI AVKAAMTGHL
VLSTLHTNDA PRTLTRLMNM GVEEYLIASS VNAIVAQRLV RKLCPFCKQD TELSQPVLDA
LGIDPATWDD SQVCAPRGCP KCNNTGYKGR IGLYEVLEVT ETMQELILQR ASVPHIHALA
IEEGMLTMRQ SGIEKIRQGI TSAQEVLKVT A
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