| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dret_1099 |
|---|
| Symbol | |
|---|
| ID | 8418924 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfohalobium retbaense DSM 5692 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013223 |
|---|
| Strand | + |
|---|
| Start bp | 1288785 |
|---|
| End bp | 1290242 |
|---|
| Gene Length | 1458 bp |
|---|
| Protein Length | 485 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 645037671 |
|---|
| Product | threonine synthase |
|---|
| Protein accession | YP_003197965 |
|---|
| Protein GI | 258405223 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0498] Threonine synthase |
|---|
| TIGRFAM ID | [TIGR00260] threonine synthase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 0.113278 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCGATGT CGATTCATGA TTTCCCTGCC TATCGCGGCG TCCTTGAGTA TGTCTGCCTG
CAGTGCCAGG CGCGCTATCC GCAGGATGAA TTGCTCTATA CCTGCCCGGA TTGCGGCGGG
GTGTTTTTGC TTGAAGACAG CCGACAGGAG AGCCTGAAAG AGCTTTCCGG GGCGCAGTGG
CGGGAACGCT TTGACGCCCG GGCTGCTGTC AAACGCAGAG CGCTGCGGGG GATTTTTCGA
TTTTACGAAC TGATCGCCCC GGTGCTTGAC GAGCAGGATA TCGTCTATCT CGGCGAAGGG
CAGACGCCGA TCATACCGTC CAGCCCGGCC TTGAACACGG CGGTGGGACA CACCGTGGCC
ATGAAAAACG ATGGTCAGAA TCCTTCAGCC TCTTTCAAGG ATCGGGGCAT GGCTTGTGCC
TTCAGCTATC TGCAATCCAT GGCCCGGGCC AATGACTGGG ATCAGCTGTT GACCATCTGC
GCCTCGACCG GCGATACCTC GGCCGCAGCC GCCTTGTACG CCGCCTATGT CGGGGCGCCG
CTGACATCAG TGGTCCTCTT GCCCGCGGGC AAGGTCACCG AACAGCAGTT GGCGCAGCCT
TTGGGCAGCG GAGCAGTGGT CCTTGAGGTG CCCGGCGTAT TTGACGATTG TATGCGGGTC
GTGGAATATC TTGCTGATAA CTATCGAGTG GCCCTGCTGA ATTCCAAGAA TCCGTGGCGC
ATTCTGGGCC AGGAATCCTA CGCCTACGAA GTCGCCCAAT GGTATGATTG GAACCTGAGC
GACAAGGCGC TCTTTGTGCC CATTGGCAAT GCCGGCAATA TTACGGCCAT CATGTCCGGG
CTGCTGAAGA TGCACGACCT GGGCATTATC ACCGCTCTGC CGCAGTTGTT CGGGGTCCAG
ACCGCTCACG CCGACCCGGT TTTCCAGTAT TACAGACAAC CGCCCGAGAG CCGGAGTTAC
TCCCCTGTAG AAGTCAAACC GAGCGTGGCC CAGGCGGCCA TGATCGGTAA TCCTGTTTCC
TTTCCCAGGG TGCGCACCTT GGCTGAGCGC TACGAGCAGG TGGCGGGCGA TGGCAGTTTC
CAGGTCGTCC AGGTCCAGGA ACAGGCGATC ATGGAATCCA TGTTGCTGGC CAACCGGCAC
GGGCACATCG CCTGCACCCA GGGTGGGGAA TGTCTGGCCG GGTTGCTCCG GGCCAAGGAA
GAAGGCCGTA TCGACCACAA AACGACCGCG GTCTTGGACG CGACGGCCCA CAGCCTGAAG
TTCATCGGTT TCCAGGACCG GTATTTTCAA AATACCTTTG CTCCGGAATA CGGGATCACT
CCCCAGGCCC AATGGCAGAA CAGGCCGGAG ACGGTTATCG ATCCTGAGGT CAAGAATCGT
TTGGCAGCCG ATGCCTTCGC CCGGGAGGCG GCCCAGGCTG TTGTCGAACG TCTCGGATTG
GAAGGGAAGG AGGACTGA
|
|---|
| Protein sequence | MSMSIHDFPA YRGVLEYVCL QCQARYPQDE LLYTCPDCGG VFLLEDSRQE SLKELSGAQW
RERFDARAAV KRRALRGIFR FYELIAPVLD EQDIVYLGEG QTPIIPSSPA LNTAVGHTVA
MKNDGQNPSA SFKDRGMACA FSYLQSMARA NDWDQLLTIC ASTGDTSAAA ALYAAYVGAP
LTSVVLLPAG KVTEQQLAQP LGSGAVVLEV PGVFDDCMRV VEYLADNYRV ALLNSKNPWR
ILGQESYAYE VAQWYDWNLS DKALFVPIGN AGNITAIMSG LLKMHDLGII TALPQLFGVQ
TAHADPVFQY YRQPPESRSY SPVEVKPSVA QAAMIGNPVS FPRVRTLAER YEQVAGDGSF
QVVQVQEQAI MESMLLANRH GHIACTQGGE CLAGLLRAKE EGRIDHKTTA VLDATAHSLK
FIGFQDRYFQ NTFAPEYGIT PQAQWQNRPE TVIDPEVKNR LAADAFAREA AQAVVERLGL
EGKED
|
|---|
| |