| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dret_1084 |
|---|
| Symbol | |
|---|
| ID | 8418909 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfohalobium retbaense DSM 5692 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013223 |
|---|
| Strand | - |
|---|
| Start bp | 1274703 |
|---|
| End bp | 1275482 |
|---|
| Gene Length | 780 bp |
|---|
| Protein Length | 259 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 645037656 |
|---|
| Product | imidazole glycerol phosphate synthase subunit HisF |
|---|
| Protein accession | YP_003197950 |
|---|
| Protein GI | 258405208 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0107] Imidazoleglycerol-phosphate synthase |
|---|
| TIGRFAM ID | [TIGR00735] imidazoleglycerol phosphate synthase, cyclase subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 0.345161 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 0.0584875 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGCTCAATA AACGGATCAT TCCCTGCCTG GACGTGCGCG ACGGCCGACT GACCAAAGGC
ATTAAATTCA AAGGCAACGT CGATATCGGC GACCCCGTGG AAACCGCCCA ACGGTATTAC
GAACAGGGCG CTGATGAAAT TGTCTTCTAC GACATCACGG CCTCCCATGA AAAACGGTCC
ATCTTTCTTG ATGTCGTTGA GCGGGTGGCC TCCAAGATCT TCATTCCCTT CTCCGTGGGC
GGTGGCATTG CCTCGGTGGA TGATATGCGC CAGGTCCTCT GGGCCGGGGC GGAAAAGATC
TCCATCAACT CCGCAGCGGT CAAAGAGCCC GGTCTTATCG AGCAAGGCGC AGCCGCTTTC
GGGTCGCAAT GCATTGTCGT GGGAATGGAC GTTTTGCGCG TCGCGCCCTC CGAGACCATC
CCCTCGGGCT ATGAGATTGT CATCCATGGC GGGCGCAAAC ATATGGGCAT TGATGCCTTG
TGGTGGGCCC GGGAGGTGCA GCGCCGGGGC GCTGGAGAAA TTTGTTTGAA CTCCATCGAC
GCCGACGGGA CGAAAGACGG CTACGAACTT ACGTTGACAC GGCTGATCGC AGACAACGTC
CGCATCCCGG TCATCGCCTC CGGCGGAGCG GGTACGCCCC GGCACATGGC CGAAGCAGTC
ACCACGGGAC ACGCCTCTGC GGCCCTTATC GCCTCCATCG TCCATTACGG CCAATATACC
ATCCCGGAAA TCAAACAGAT CATGCACGAT CAGGGCGTGC CCGTGCGCAT GGTCTGGTAG
|
|---|
| Protein sequence | MLNKRIIPCL DVRDGRLTKG IKFKGNVDIG DPVETAQRYY EQGADEIVFY DITASHEKRS
IFLDVVERVA SKIFIPFSVG GGIASVDDMR QVLWAGAEKI SINSAAVKEP GLIEQGAAAF
GSQCIVVGMD VLRVAPSETI PSGYEIVIHG GRKHMGIDAL WWAREVQRRG AGEICLNSID
ADGTKDGYEL TLTRLIADNV RIPVIASGGA GTPRHMAEAV TTGHASAALI ASIVHYGQYT
IPEIKQIMHD QGVPVRMVW
|
|---|
| |