Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dret_1078 |
Symbol | |
ID | 8418903 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Desulfohalobium retbaense DSM 5692 |
Kingdom | Bacteria |
Replicon accession | NC_013223 |
Strand | - |
Start bp | 1269764 |
End bp | 1270615 |
Gene Length | 852 bp |
Protein Length | 283 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 645037650 |
Product | hydroxymethylbutenyl pyrophosphate reductase |
Protein accession | YP_003197944 |
Protein GI | 258405202 |
COG category | [I] Lipid transport and metabolism [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0761] Penicillin tolerance protein |
TIGRFAM ID | [TIGR00216] (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming) |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 0.0902998 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 19 |
Fosmid unclonability p-value | 0.209079 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACTGAAG TACTCCGCGC TGAAACAGCC GGTTTCTGCA TGGGGGTCGA TTTGGCCCTG CGCAAACTCA ATTCCCAAGT CGAAGCCAAG GACACGAGCC CTATCTTCAC CTTCGGTCCC ATTATCCACA ATCCGCAGGT CCTGGCCCAT TATGCGGCCC GTGGAGTGAC CGAATCCGAA TCCCCGAGCA CCATCCCGGC CCAGAGCCGA GCGGTCATCA GGGCCCACGG CATTCCCCGC TTGCTGGAGG ACCAATTGCG CTCCAAGGGA GTCACTCTGG TCGATGCCAC CTGTCCCAAG GTCAAAAAGG CCCAACTGCT GATCGAAAAA CAGACCAAAC AGGGGCGGCA TCTTCTCTTG TTTGGCGAAA GCGATCATCC TGAAGTCAAA GGGTTGCTCA GTTACGCCGA CGCGGAGGCC CTGGTCTTCG ACTCCCTGCT CCAACTCCAG GGCAAGGACC TCGCTCCGGA AAAGCGCTAT TTCCTCGCCT CCCAGACCAC GCAGGACAGG GAGGAATTTC GGACCATCCG CGACTACCTG CTGGAACATG TCGATGCCTC CATGCCCATT TTCGACACCA TCTGCGATGC GACACGCGAG CGGCAGGTGG AGGCCAAGCG GATCGCCAAA CAGGTTGATT ACATGATCGT CGTCGGGGGC TTGACCAGCG GCAACACCCG CCGCCTCGCT CAGGTCATCA CCGCGCAGGG GACCCCCTGT GCCCATATCG AACAGGCCGA TGAACTCCCG CTGCCTGCCC TGACTGGCGT CCAGCGCATC GGACTTACTG CCGGCGCCTC CACCCCCAAA TATATCATCG ACGCCGTGGA AAACCGTTTG CGGGAACTCT AG
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Protein sequence | MTEVLRAETA GFCMGVDLAL RKLNSQVEAK DTSPIFTFGP IIHNPQVLAH YAARGVTESE SPSTIPAQSR AVIRAHGIPR LLEDQLRSKG VTLVDATCPK VKKAQLLIEK QTKQGRHLLL FGESDHPEVK GLLSYADAEA LVFDSLLQLQ GKDLAPEKRY FLASQTTQDR EEFRTIRDYL LEHVDASMPI FDTICDATRE RQVEAKRIAK QVDYMIVVGG LTSGNTRRLA QVITAQGTPC AHIEQADELP LPALTGVQRI GLTAGASTPK YIIDAVENRL REL
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