Gene Dret_1078 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDret_1078 
Symbol 
ID8418903 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfohalobium retbaense DSM 5692 
KingdomBacteria 
Replicon accessionNC_013223 
Strand
Start bp1269764 
End bp1270615 
Gene Length852 bp 
Protein Length283 aa 
Translation table11 
GC content60% 
IMG OID645037650 
Producthydroxymethylbutenyl pyrophosphate reductase 
Protein accessionYP_003197944 
Protein GI258405202 
COG category[I] Lipid transport and metabolism
[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0761] Penicillin tolerance protein 
TIGRFAM ID[TIGR00216] (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming) 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value0.0902998 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value0.209079 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACTGAAG TACTCCGCGC TGAAACAGCC GGTTTCTGCA TGGGGGTCGA TTTGGCCCTG 
CGCAAACTCA ATTCCCAAGT CGAAGCCAAG GACACGAGCC CTATCTTCAC CTTCGGTCCC
ATTATCCACA ATCCGCAGGT CCTGGCCCAT TATGCGGCCC GTGGAGTGAC CGAATCCGAA
TCCCCGAGCA CCATCCCGGC CCAGAGCCGA GCGGTCATCA GGGCCCACGG CATTCCCCGC
TTGCTGGAGG ACCAATTGCG CTCCAAGGGA GTCACTCTGG TCGATGCCAC CTGTCCCAAG
GTCAAAAAGG CCCAACTGCT GATCGAAAAA CAGACCAAAC AGGGGCGGCA TCTTCTCTTG
TTTGGCGAAA GCGATCATCC TGAAGTCAAA GGGTTGCTCA GTTACGCCGA CGCGGAGGCC
CTGGTCTTCG ACTCCCTGCT CCAACTCCAG GGCAAGGACC TCGCTCCGGA AAAGCGCTAT
TTCCTCGCCT CCCAGACCAC GCAGGACAGG GAGGAATTTC GGACCATCCG CGACTACCTG
CTGGAACATG TCGATGCCTC CATGCCCATT TTCGACACCA TCTGCGATGC GACACGCGAG
CGGCAGGTGG AGGCCAAGCG GATCGCCAAA CAGGTTGATT ACATGATCGT CGTCGGGGGC
TTGACCAGCG GCAACACCCG CCGCCTCGCT CAGGTCATCA CCGCGCAGGG GACCCCCTGT
GCCCATATCG AACAGGCCGA TGAACTCCCG CTGCCTGCCC TGACTGGCGT CCAGCGCATC
GGACTTACTG CCGGCGCCTC CACCCCCAAA TATATCATCG ACGCCGTGGA AAACCGTTTG
CGGGAACTCT AG
 
Protein sequence
MTEVLRAETA GFCMGVDLAL RKLNSQVEAK DTSPIFTFGP IIHNPQVLAH YAARGVTESE 
SPSTIPAQSR AVIRAHGIPR LLEDQLRSKG VTLVDATCPK VKKAQLLIEK QTKQGRHLLL
FGESDHPEVK GLLSYADAEA LVFDSLLQLQ GKDLAPEKRY FLASQTTQDR EEFRTIRDYL
LEHVDASMPI FDTICDATRE RQVEAKRIAK QVDYMIVVGG LTSGNTRRLA QVITAQGTPC
AHIEQADELP LPALTGVQRI GLTAGASTPK YIIDAVENRL REL