Gene Dret_1011 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDret_1011 
Symbol 
ID8418834 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfohalobium retbaense DSM 5692 
KingdomBacteria 
Replicon accessionNC_013223 
Strand
Start bp1188766 
End bp1190676 
Gene Length1911 bp 
Protein Length636 aa 
Translation table11 
GC content60% 
IMG OID645037581 
ProductABC transporter related 
Protein accessionYP_003197877 
Protein GI258405135 
COG category[R] General function prediction only 
COG ID[COG0488] ATPase components of ABC transporters with duplicated ATPase domains 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value0.954717 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value0.0514719 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCCTTAT TGACTGCGCA AGATCTCCGA TTGACCCACA TCGGTCCGCC TCTTCTTGAT 
GGAATCGATT TGCAGATCCA CCCTGGCGAC AGGATCTGTC TTCTGGGACG CAATGGAGCG
GGCAAATCCA CATTGATGAG CATCCTGGCC GGGATTCGAT CTGCGGATGC CGGGACCGTG
CACCGGGACA CCGGTGTCGA AGTGGCCCAT CTGCCCCAGG AACTGCCGGA TTCGGAAATG
GACAAGTCGG TCTATGCCGT GGTGGCTTCC GGACTGGGGG AGCAAGGCGA AAGTCTTGTC
GCCTATCAGC GGCAACTCGA TCTGGCGGAG TTGCAAGGGC ATCCGGATAT CCGTGCGCTG
GAGGCAGCCC AACAGGAAGT GGAGCGGCAT GACGGCTGGG ACGCGGACCG GCGCATCCGC
GAGATGCTCA CCCGGCTCAA GTTGGACGGT TCGGCTCACT CCCGCCATTT GTCGGGCGGT
GTCCAGCGCA GGGTTCTTCT GGCCCGGACA CTGGTCGGGA CACCGGATAT CCTGCTTTTG
GACGAGCCGA CGAACCATCT GGACATGCAA TCCATCCAAT GGCTGGAGGA ATATATCCTG
CGCCATGTGC CGACGCTTTT GTTCGTCACC CACGATCGAG CCTTTCTGCG CCGCGTGGCC
AACGGAATCA TCGAACTCGA CCGCGGGATG TTGACGCGCT GGCAATGCGA TTATCCGACC
TATTGCGAAC GCAAGGAAGC GGCCCTGGCG GCCGAAGAAG AGCAGTGGCG GCGCCAGAAC
CAGCGGCTTG CCGAGGAGGA AGCCTGGCTC CGCAAAGGAC TCAAGGCCAG GCGCAAGCGG
AATATGGGCC GTGTGCGGGC CCTGGAACGG TTGCGCCAGG AATGTCGGCA ACGGCGGCAG
CGTGAAGGCA CCGCCCGATT GGCTATTCAG GAGGCGCGCC AGAGCGGCCG GGTCGTTGTT
GAGGCCGAAG CAGTGACCCT GGGCTACACC GACGCCCCGG TAGTCCGGGA TTTTTCACTT
GTTATCCAGC GGGGGGACAA GGTCGGGATT GTTGGTCCAA ACGGGTGTGG GAAAACGACG
TTGCTCAAAG GGCTCTTTGG GGAATTGGCT CCGGCTCAGG GGCAGGTGCG ACTGGGAACC
AACCTGGAGG TCGCGTATTC GGATCAGATG CGCGACGCAT TGCCGCCGGA AACCCCGGCC
CGAGACATTG TGGCTGAAGG CAATGATTTT CTTGATGTCG GTGCCAAGCG CATGCATGTA
GTTTCGTATC TGCGCGATTT TCTCTTTACC CCTGAACGGG CTCAGATACC GTGCAAGCTC
TTATCCGGCG GGGAGCGCAA CCGGCTGCTG CTGGCGACGT TGTTTGCCCG GCCGGCCAAT
GTCCTGGTTT TAGACGAACC TACGAACGAT CTCGACAGCG AGACGTTGGA ACTTTTGGAA
TCGAAACTGG TGGAATTCGA GGGCACTGTT TTGCTCGTCA GTCACGACCG GCAATTCATC
GAAAATGTGG TCACCTCCAC CCTGGTGTTT GAGGCCGACG GTCAAGTGGT TGAACACGCT
GGCGCAGTGC CCCGATGGGA GGGGCTCTGG GCCGGTGCGG CGGAGCCGGA GCCGCGATCT
GAGAAATCCC CCGCCACTTC GTCATCCAAG CCAAAGCGGG AGCGGCCGCG GAAGTTGGGG
TTCAAGGAGG CCCGGGAACT GGAAAAGCTC CCGGAGGCTA TTGAGGCCAA GGAAGGCGAG
TTGGACGCAT TGCACTCCTT CATGGCCGCC GAAGATTTTT ACCGGCAGGA TGAGGCGCGC
ATCAAGGAAG CCGTGGAGCG ATTGGAACCG TTACAAGAGG AAATCGCCTC TTTGTACCAG
CGGTGGGAAG AACTTGAGGC CATCCGGCTT CATTCCGAGC ACAAGGGGTA A
 
Protein sequence
MALLTAQDLR LTHIGPPLLD GIDLQIHPGD RICLLGRNGA GKSTLMSILA GIRSADAGTV 
HRDTGVEVAH LPQELPDSEM DKSVYAVVAS GLGEQGESLV AYQRQLDLAE LQGHPDIRAL
EAAQQEVERH DGWDADRRIR EMLTRLKLDG SAHSRHLSGG VQRRVLLART LVGTPDILLL
DEPTNHLDMQ SIQWLEEYIL RHVPTLLFVT HDRAFLRRVA NGIIELDRGM LTRWQCDYPT
YCERKEAALA AEEEQWRRQN QRLAEEEAWL RKGLKARRKR NMGRVRALER LRQECRQRRQ
REGTARLAIQ EARQSGRVVV EAEAVTLGYT DAPVVRDFSL VIQRGDKVGI VGPNGCGKTT
LLKGLFGELA PAQGQVRLGT NLEVAYSDQM RDALPPETPA RDIVAEGNDF LDVGAKRMHV
VSYLRDFLFT PERAQIPCKL LSGGERNRLL LATLFARPAN VLVLDEPTND LDSETLELLE
SKLVEFEGTV LLVSHDRQFI ENVVTSTLVF EADGQVVEHA GAVPRWEGLW AGAAEPEPRS
EKSPATSSSK PKRERPRKLG FKEARELEKL PEAIEAKEGE LDALHSFMAA EDFYRQDEAR
IKEAVERLEP LQEEIASLYQ RWEELEAIRL HSEHKG