| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dret_1009 |
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| Symbol | |
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| ID | 8418832 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfohalobium retbaense DSM 5692 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013223 |
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| Strand | + |
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| Start bp | 1184079 |
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| End bp | 1185788 |
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| Gene Length | 1710 bp |
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| Protein Length | 569 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 645037579 |
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| Product | methyl-accepting chemotaxis sensory transducer with Cache sensor |
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| Protein accession | YP_003197875 |
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| Protein GI | 258405133 |
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| COG category | [N] Cell motility
[T] Signal transduction mechanisms |
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| COG ID | [COG0840] Methyl-accepting chemotaxis protein |
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| TIGRFAM ID | [TIGR01168] Gram-positive signal peptide, YSIRK family |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.103849 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.0253995 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGTTTTT CGCTTTCCAT CAATAAGAAG ATGTGGGTCA TCTTTGCTCT GGTGGTCGTG
CTTTTTGCCG CGACCACGAT TTTTTCCTCT CTGGCCTTGA ACAAAACCAA GTCCATTGCA
CTGGAGACGA CAGCCGAAGA GATGTTCAAA GGTCAGAAGC AAAAACTGAA AGTTGGAACC
CACAGCATTG CCTTGGCGCT GGGTGAGCAA CTGGAGGGTG TTTCTGATAC AACAGAACGG
ATTCAGATGA TTCGGGAGGG GGTCGACAAG ATCCGTTTTG AGAAGGACAA ATCTGGCTAC
TATTTTGTCT ACAAAAATAC GACAAATGTC GCCCTGCCGA CGAAAAAAGA GCTTCAGGGA
GAGGATCTGG GGCAAGCCAA GGACAAAAAC GGGGTCTATT TTGTTCGGGA ACTCAACGAA
CAGGCCCAAG CCGGGGGCGG GTTTGTGGAG TATGTCTTTC CCAAGCCCGG GGCCGGTGAT
CAACCCAAGC TGGCCTATGC GGAAATGATT CCCGGTACCG ACATGTGGAT TGGGACCGGG
GTGTATCTGG ACAACATCGC CGCGGCAAAG AACAATCTCA ATGCGACCAT GTCCGCGTCG
ATTTCCAAAT GGAATATTCT CCGTTACGGC GCCTCGGCAG CCATCTTCTT GGTCATTATC
GGGGTTTTGT ACCTCATCAC CCGCAGTATC GTTCGGCCCT TGAGGCAGAC CATCGATGTT
TTGAACAACA GTTCGGAGAT GATGACCGCG TCCTCGGATG AAGTTTCTTC TTCGAGCCAG
TCTTTGGCTG AAGGGGCGAA CGAGCAAGCC TCCAGCCTGG AAGAGACTTC TTCTTCGCTT
GAAGAGATGT CCTCGCAGAC CCAGCAGAAC TCCAGCAACG CCAGCCAGGC CGAACAGACC
ATGCAGCAGA CGAAGACGGC CGTGGACACC GGGGTCGAGT CCATGAGCCG CATGGGCACG
GCCATCAATG CCATCAAGCA GTCCTCGGAA GAAACGTCCA AGATTATGAA GACCATCGAC
GACATCGCCT TCCAGACCAA CCTGTTGGCC TTGAATGCTG CCGTGGAAGC CGCTCGCGCC
GGAGAGGCTG GCAAAGGTTT TGCAGTTGTG GCTGAGGAAG TCCGCAGTCT GGCGCAGCGT
TCGGCTGAGG CGGCCAAAAA CACCGCTTCA CTGATTGAAG ACGCCCAATC CAACGCCAAT
CACGGCGTTC AGGTTGCTGA CGAGGTTTCC AGCAGCCTTG AGGAGATCCA GAAGAGCGCG
GATCAGGTCG GCATTCTGGT TGCCGAGATC GCTGCGGCGA GCAAAGAACA ATCCCAAGGG
ATCGAACAGA TCAATACGGC GGTGGCCGAA ATGGACAAGG TGGTCCAGAA AAACGCTTCG
GACTCTGAGG AAACCGCCAG CGCTTCTGAG GAATTGTCTG CGCAGGCTCA GGAATTGCAA
AATGCGGTGC TCGAATTGGT GGCCCTGTTG CGCGGCGGCG ACGGAGCGTT AGGCGGAAAC
GGTGCCCAAC CAAAAAGCAG CGGTTCCCAG ACCCAACAAC GCAGCCGCTC CCGCACCGGG
AGTTCCCAAC CGCGGCAGCG CCAGGCCGTT GGCCAACACC CCTCGCGGCA GCAAAGCCGC
GCCACTGCAG CCAAGCGGCA GCAGTCCCAA CAGGATATCC GCCCCGATGA GGTGATCCCC
CTCGACGACG ATTCGTTCAA CGATTTCTAG
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| Protein sequence | MRFSLSINKK MWVIFALVVV LFAATTIFSS LALNKTKSIA LETTAEEMFK GQKQKLKVGT
HSIALALGEQ LEGVSDTTER IQMIREGVDK IRFEKDKSGY YFVYKNTTNV ALPTKKELQG
EDLGQAKDKN GVYFVRELNE QAQAGGGFVE YVFPKPGAGD QPKLAYAEMI PGTDMWIGTG
VYLDNIAAAK NNLNATMSAS ISKWNILRYG ASAAIFLVII GVLYLITRSI VRPLRQTIDV
LNNSSEMMTA SSDEVSSSSQ SLAEGANEQA SSLEETSSSL EEMSSQTQQN SSNASQAEQT
MQQTKTAVDT GVESMSRMGT AINAIKQSSE ETSKIMKTID DIAFQTNLLA LNAAVEAARA
GEAGKGFAVV AEEVRSLAQR SAEAAKNTAS LIEDAQSNAN HGVQVADEVS SSLEEIQKSA
DQVGILVAEI AAASKEQSQG IEQINTAVAE MDKVVQKNAS DSEETASASE ELSAQAQELQ
NAVLELVALL RGGDGALGGN GAQPKSSGSQ TQQRSRSRTG SSQPRQRQAV GQHPSRQQSR
ATAAKRQQSQ QDIRPDEVIP LDDDSFNDF
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