| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dret_0999 |
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| Symbol | |
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| ID | 8418821 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfohalobium retbaense DSM 5692 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013223 |
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| Strand | + |
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| Start bp | 1173270 |
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| End bp | 1174013 |
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| Gene Length | 744 bp |
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| Protein Length | 247 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 645037568 |
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| Product | Rhomboid family protein |
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| Protein accession | YP_003197865 |
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| Protein GI | 258405123 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0705] Uncharacterized membrane protein (homolog of Drosophila rhomboid) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 0.46711 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.0183621 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGTTCCCAC TTCGCGATTA TGTTCCACGT TTGCACCGTC CGATTGCGGT TTGGTGCATC
ATCGGGGTCA ACCTCCTGTT TTTTCTGTTT GAAATGGGGC TGAGCCAATC CGATCTGGTC
CGGGTTTTCC ATGTCCTGGG GGTCGTTCCG GCGCGCTATT TCCATCCGGA ATGGGCCCAG
TGGATGGGAT ATCCGGCCGG AGGGATCCTG CCGTTTTTTA CCCATATGTT TTTACACAGC
GGCTGGTTTC ATTTCCTGAT CAATATGTGG ATTCTGTGGG TTTTTGCCGA CAATGTCGAA
GATGTCATGG GGCCCGGCCG ATTTATCGTC TTCTACCTGC TGTGCGGACT GGGGGCCCTG
GGAGCGCATC TGTTTTTTTA TACCGATTCG TCTGTGCCTG TGGTTGGGGC TTCCGGAGCC
ATTGCCGGGG TTATGGGGGC CTATTTGTTA TTGTATCCCC ACGCCCGGGT GCTGACGCTT
ATTCCCATCT TTTTCATCCC TTATTTTATT GATCTGCCAG CGTTGGTATT TTTGGGGGTG
TGGTTTTTTA TGCAGTTGCT CTCCGGCGTT TTTTCCGGCA TGGAGGGCGG CTCAGGCGCT
GGCGTCGCCT GGTGGGCCCA TGCCGGCGGG TTTGTGGTCG GGATGTTGCT GATCCCCTTG
TTCCGGGTTC CGTCACGGTG TTATTATTGC CATTCCCGGA GCAGGGGCGG ACGGGGCGGT
GGCGATTCGT TCCGTTTCGA TTAG
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| Protein sequence | MFPLRDYVPR LHRPIAVWCI IGVNLLFFLF EMGLSQSDLV RVFHVLGVVP ARYFHPEWAQ
WMGYPAGGIL PFFTHMFLHS GWFHFLINMW ILWVFADNVE DVMGPGRFIV FYLLCGLGAL
GAHLFFYTDS SVPVVGASGA IAGVMGAYLL LYPHARVLTL IPIFFIPYFI DLPALVFLGV
WFFMQLLSGV FSGMEGGSGA GVAWWAHAGG FVVGMLLIPL FRVPSRCYYC HSRSRGGRGG
GDSFRFD
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