| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dret_0996 |
|---|
| Symbol | |
|---|
| ID | 8418818 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfohalobium retbaense DSM 5692 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013223 |
|---|
| Strand | - |
|---|
| Start bp | 1169307 |
|---|
| End bp | 1170542 |
|---|
| Gene Length | 1236 bp |
|---|
| Protein Length | 411 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 645037565 |
|---|
| Product | uracil-xanthine permease |
|---|
| Protein accession | YP_003197862 |
|---|
| Protein GI | 258405120 |
|---|
| COG category | [F] Nucleotide transport and metabolism |
|---|
| COG ID | [COG2233] Xanthine/uracil permeases |
|---|
| TIGRFAM ID | [TIGR00801] uracil-xanthine permease |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 0.594707 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.00519474 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGTCCTCAG ATACCGCTTA CCACTTCCGC TTCAAAGACG GCCTCGTCGG GGCCCAGATG
TTGTTCGTGG CCTTCGGCGC TCTGGTTCTC GTTCCCTTAC TGACCGGACT GGATCCCAAT
GTTGCCTTGT TCACCGCCGG GGTGGGAACG CTTATTTTCC AGTTCGTGAC CAAGCGCATG
GTCCCGGTCT TCCTGGCATC CTCGTTCGCG TTTATCGCCC CGATCATTTA CGGCGTCGAG
ACCTGGGGCA TTCCCTCGAC CCTGTGCGGC TTGGCCGCAG CCGGGGTTGT CTACATGCTG
CTGAGCCTGA TCATCAAACT CAAAGGACCA GCCGCGGTCC AGCGCCTGCT GCCCTCCATT
GTCACCGGTC CGGTGATCAT GGTCATCGGA CTTATCCTGG CTCCGGTGGC GGTCAACATG
GCCATGGGCA GAACCGGAGA CGGCGGCGAT GTGCTTGTAG CCAAAGATAT CGCGGTCATC
ATCTCCATGG CCTCATTGCT GACCACCGTC CTTGTCTCTC TGTTGGGCAA GGGGTTTTTC
CGCCTTATCC CTATTTTATG CGGGATCATC GTTGGCTATA TCCTATCGTT GACCATGGGG
ATTGTCGACT TCACTCCTGT CCTGGACGCC CCGTGGCTCG CTGTGCCCAA TTTCACCATG
CCTGAATGGA ATCTCCAGGC GATCTTGTAC ATTATTCCCG TGGCCATCGC CCCAGCCATC
GAACACTTCG GCGACGTGCT GGCCATCAGT TCAGTGACCA AGAAAAATTA CCTTGACGAT
CCGGGTATCC ACAGGACCAT GCTTGGAGAC GGCCTGGCGA CCTCCCTCGC CTCGTTCCTC
GGCGGTCCGC CGAACACCAC CTATTCGGAG GTCACCGGAG CTGTGGCCCT GCTCAAGGTC
TTCAACCCGG CCATCATGAC CTGGGCGGCC TGCATCGCCA TTGCCTTGGC CTTTGTGGGC
AAAATCGGGG CCTTCTTGTT GACCATTCCG GTTCCGGTCA TGGGCGGGAT CATGATCCTG
CTGTTCGGGA CCATCATGGT CGTCGGGGTC AATTCCCTGG TCCGCTCCCA GGTCGACCTC
ATGGAGCCGC GCAATATGTG CATCGTGGCC CTGATCGTTG TCCTTGGTAT CGGGGGCATG
ACCTTTCAGA CCGGAGAATT CACGTTGAAA GGGATTGGTC TGGCCGGTCT GGTTGGCGTG
ATACTGAATC TGGTCCTGCC CAATCCGCGG CAATAA
|
|---|
| Protein sequence | MSSDTAYHFR FKDGLVGAQM LFVAFGALVL VPLLTGLDPN VALFTAGVGT LIFQFVTKRM
VPVFLASSFA FIAPIIYGVE TWGIPSTLCG LAAAGVVYML LSLIIKLKGP AAVQRLLPSI
VTGPVIMVIG LILAPVAVNM AMGRTGDGGD VLVAKDIAVI ISMASLLTTV LVSLLGKGFF
RLIPILCGII VGYILSLTMG IVDFTPVLDA PWLAVPNFTM PEWNLQAILY IIPVAIAPAI
EHFGDVLAIS SVTKKNYLDD PGIHRTMLGD GLATSLASFL GGPPNTTYSE VTGAVALLKV
FNPAIMTWAA CIAIALAFVG KIGAFLLTIP VPVMGGIMIL LFGTIMVVGV NSLVRSQVDL
MEPRNMCIVA LIVVLGIGGM TFQTGEFTLK GIGLAGLVGV ILNLVLPNPR Q
|
|---|
| |