Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dret_0946 |
Symbol | |
ID | 8418766 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Desulfohalobium retbaense DSM 5692 |
Kingdom | Bacteria |
Replicon accession | NC_013223 |
Strand | - |
Start bp | 1119359 |
End bp | 1120582 |
Gene Length | 1224 bp |
Protein Length | 407 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | 645037513 |
Product | glucose sorbosone dehydrogenase |
Protein accession | YP_003197812 |
Protein GI | 258405070 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG2133] Glucose/sorbosone dehydrogenases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 0.415737 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 9 |
Fosmid unclonability p-value | 0.000365484 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGAAACCAG TATGTTCTTC GATACAACAC CTGGTTCCTT TATTTATCCT GGTGTTATTG TCCATCCCGG CCGGAGCTGC CGACAACGCC GTGACGGGCA ATGCCGGGTC AACGCTTTAT GTTGAAAGTT TTGGGGCGTT TGATGAACCC TGGGCCATGT GCTTTCTGCC GAACAAAAAT CTGCTTGTCA CGGAGAAAAA AGGCAATCTG ATCCTGTTCA ATGTGGATGA CCGCACCCGG ACAGCGGTTC AGGGGGTGCC CAAGGTGGCC TACGGCGGCC AGGGGGGATT GGGGGATGTT ATTCTTCACC CGCAATTTGA GGACAACCAC TGGATATACC TTTCCTATGC TGAGCAGGAC GCATCAGGCA AGAAAGGTGC GGTTGTGATC CGGGCAACGC TTCGTTTCAA CGATGCCGGG CCTGCACTCG AAGGCCATCA GATTATCTGG AAACAGATCC CTAAAGTACC CGGCAGCGGG CACTACTCGC ACCGGCTGGC ATTCAGCCCG GACGGAAAAT TGTTCATCAC CTCTGGTGAT CGCCAAAAGC AGACCCCGGC CCAGGACTGG ACCCAGAATC TGGGCAAGGT TATCCGTTTA AACGAGGACG GATCTGTTCC GCCTGACAAC CCATTCCAGA ATAAGGGAGA CCTTGCCAAA ACCTTCTGGA CGCTGGGGCA CCGGAACATT CTGGGGATTG CCTTTGATCG CCAGGGCCGG CTGTGGACTC ATGAAATGGG ACCCAGGCAC GGGGACGAGT TCAACTTGAT TGTCAGGGGA GACAATTATG GTTGGCCCAT TGTTTCCTGG GGCGACCAGT ATTCAGGAAT TCCCATCCCT GATCATGACA CCCGCCCGGA ATTTAATGCA CCTGAAATGT ACTGGGTTCC CACCGTTGCC CCTTCAGGCC TGATTATCTA TGACGGTGCC CTTTTCCAGC AATGGCAGGG TGATGCATTC CTTGGCGGGC TGCGATCCCG ATCTCTGGTC CGCATTGAAA TGAACGGGAC CAAGGCCCAT GAGGCAGAAC GCTTTGCCAT GGGCAAACGC ATCCGGGAAA TTGAGCAGGG TCCAAATGGT GCCATCTGGC TTTTGGAGGA CAAACAGAAC GGCCGCTTGC TTCGGCTGAC GCCCAAGAAC GGCGAGATTG TTGATCGGAA TGCGTTGATA CCGGGTCGCA CGACAGGGGC CAATTGCTGC TTACAGCGGA GACTCGCAGG GTAA
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Protein sequence | MKPVCSSIQH LVPLFILVLL SIPAGAADNA VTGNAGSTLY VESFGAFDEP WAMCFLPNKN LLVTEKKGNL ILFNVDDRTR TAVQGVPKVA YGGQGGLGDV ILHPQFEDNH WIYLSYAEQD ASGKKGAVVI RATLRFNDAG PALEGHQIIW KQIPKVPGSG HYSHRLAFSP DGKLFITSGD RQKQTPAQDW TQNLGKVIRL NEDGSVPPDN PFQNKGDLAK TFWTLGHRNI LGIAFDRQGR LWTHEMGPRH GDEFNLIVRG DNYGWPIVSW GDQYSGIPIP DHDTRPEFNA PEMYWVPTVA PSGLIIYDGA LFQQWQGDAF LGGLRSRSLV RIEMNGTKAH EAERFAMGKR IREIEQGPNG AIWLLEDKQN GRLLRLTPKN GEIVDRNALI PGRTTGANCC LQRRLAG
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