Gene Dret_0942 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDret_0942 
Symbol 
ID8418762 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfohalobium retbaense DSM 5692 
KingdomBacteria 
Replicon accessionNC_013223 
Strand
Start bp1114987 
End bp1115835 
Gene Length849 bp 
Protein Length282 aa 
Translation table11 
GC content38% 
IMG OID645037509 
ProductGntR domain protein 
Protein accessionYP_003197808 
Protein GI258405066 
COG category[K] Transcription 
COG ID[COG2186] Transcriptional regulators 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value0.116574 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones12 
Fosmid unclonability p-value0.00459968 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGAATCTTT CCCTACCTTC TGACCTTAAA GAGCTGATAG AAGAACAGAT AAAGTCAGGA 
CAATATGTTA GCGCTGAAGA ACTGGTATGT GATGCTTTGC ATAATAAGTT TGCAAACGCT
ATCCAATTTG AAACTCTATC AAATCGAAAA ACCGACCCTC AGCCTGAGTT GGTCTTTAGC
AAAATTCACG AAAGTATATA TAGCGAATCT TTGAAACCAG GAGAATACCT GGGAACGGAA
AATGATATCG CTCAGATGAT GCAAGTTGAA CGTTTATCTG CAGAGAAAGC AATGAAGGCA
CTGTGGGAGG CGGGATGCGT AGAAAAAGAT GAGAACGATA CTTATTTTAT CACATTTTCA
AAGCCACACA TATCAGTAAA TCCTTTTTCC ACTGTTACAA CATGTAATGA TGAATCGATA
TATGACCTTT TAGAGGTTCG CGCTGGGCTG GAAAGTTATG GTGTTGTTCT TGCTGTAGAG
AGATCCACAG ATCAAGATAT TCAATTTATG GAAGAGGCGC TTTCAAAAAA CAGAGCAAAT
AATCAAGACA AAAACAGCGC ACGAGATGCA GACATTGCAT TCCATCTTGG GATAGCTTAT
GCAACGCATA ATATTATTTA TATCGATCTC ATAAAAAGAC TTTATGAGCA AATGTTTAGT
AGTATTAACG AGCTTCATTC CTTATTATAT GAGACACCAA AAAATTTAGA GATTATAGAA
CAGCACCACT TTAAAATTCT TAGTGCTATC TCAGGCCGAG ATAAAGATGG GGCTAAGCGT
CATATGCTCC AGCATATTAT GTTTTTGAAA AGCTTTTTGA GCACCCATGC CCGGACTGGT
GCGTTGTAG
 
Protein sequence
MNLSLPSDLK ELIEEQIKSG QYVSAEELVC DALHNKFANA IQFETLSNRK TDPQPELVFS 
KIHESIYSES LKPGEYLGTE NDIAQMMQVE RLSAEKAMKA LWEAGCVEKD ENDTYFITFS
KPHISVNPFS TVTTCNDESI YDLLEVRAGL ESYGVVLAVE RSTDQDIQFM EEALSKNRAN
NQDKNSARDA DIAFHLGIAY ATHNIIYIDL IKRLYEQMFS SINELHSLLY ETPKNLEIIE
QHHFKILSAI SGRDKDGAKR HMLQHIMFLK SFLSTHARTG AL