Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dret_0942 |
Symbol | |
ID | 8418762 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Desulfohalobium retbaense DSM 5692 |
Kingdom | Bacteria |
Replicon accession | NC_013223 |
Strand | - |
Start bp | 1114987 |
End bp | 1115835 |
Gene Length | 849 bp |
Protein Length | 282 aa |
Translation table | 11 |
GC content | 38% |
IMG OID | 645037509 |
Product | GntR domain protein |
Protein accession | YP_003197808 |
Protein GI | 258405066 |
COG category | [K] Transcription |
COG ID | [COG2186] Transcriptional regulators |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 0.116574 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 12 |
Fosmid unclonability p-value | 0.00459968 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGAATCTTT CCCTACCTTC TGACCTTAAA GAGCTGATAG AAGAACAGAT AAAGTCAGGA CAATATGTTA GCGCTGAAGA ACTGGTATGT GATGCTTTGC ATAATAAGTT TGCAAACGCT ATCCAATTTG AAACTCTATC AAATCGAAAA ACCGACCCTC AGCCTGAGTT GGTCTTTAGC AAAATTCACG AAAGTATATA TAGCGAATCT TTGAAACCAG GAGAATACCT GGGAACGGAA AATGATATCG CTCAGATGAT GCAAGTTGAA CGTTTATCTG CAGAGAAAGC AATGAAGGCA CTGTGGGAGG CGGGATGCGT AGAAAAAGAT GAGAACGATA CTTATTTTAT CACATTTTCA AAGCCACACA TATCAGTAAA TCCTTTTTCC ACTGTTACAA CATGTAATGA TGAATCGATA TATGACCTTT TAGAGGTTCG CGCTGGGCTG GAAAGTTATG GTGTTGTTCT TGCTGTAGAG AGATCCACAG ATCAAGATAT TCAATTTATG GAAGAGGCGC TTTCAAAAAA CAGAGCAAAT AATCAAGACA AAAACAGCGC ACGAGATGCA GACATTGCAT TCCATCTTGG GATAGCTTAT GCAACGCATA ATATTATTTA TATCGATCTC ATAAAAAGAC TTTATGAGCA AATGTTTAGT AGTATTAACG AGCTTCATTC CTTATTATAT GAGACACCAA AAAATTTAGA GATTATAGAA CAGCACCACT TTAAAATTCT TAGTGCTATC TCAGGCCGAG ATAAAGATGG GGCTAAGCGT CATATGCTCC AGCATATTAT GTTTTTGAAA AGCTTTTTGA GCACCCATGC CCGGACTGGT GCGTTGTAG
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Protein sequence | MNLSLPSDLK ELIEEQIKSG QYVSAEELVC DALHNKFANA IQFETLSNRK TDPQPELVFS KIHESIYSES LKPGEYLGTE NDIAQMMQVE RLSAEKAMKA LWEAGCVEKD ENDTYFITFS KPHISVNPFS TVTTCNDESI YDLLEVRAGL ESYGVVLAVE RSTDQDIQFM EEALSKNRAN NQDKNSARDA DIAFHLGIAY ATHNIIYIDL IKRLYEQMFS SINELHSLLY ETPKNLEIIE QHHFKILSAI SGRDKDGAKR HMLQHIMFLK SFLSTHARTG AL
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